Strain Fitness in Pseudomonas putida KT2440 around PP_5611

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,187,768	+		PP_3683	0.90	+0.7
4,187,768	+		PP_3683	0.90	+1.2
4,187,768	+		PP_3683	0.90	+1.2
4,187,768	+		PP_3683	0.90	+0.9
4,187,774	+				-2.1
4,187,809	-				+0.0
4,187,824	+				+0.3
4,187,824	+				+1.5
4,187,825	-				-3.0
4,187,825	-				-0.5
4,187,825	-				-0.1
4,187,825	-				-1.9
4,187,825	-				+0.5
4,187,825	-				+1.6
4,187,828	+				-1.5
4,187,828	+				-2.7
4,187,829	-				+0.3
4,187,852	+				-2.5
4,187,853	-				+0.1
4,187,893	+				+1.4
4,187,894	-				+1.2
4,187,975	-				+0.8
4,187,975	-				+1.0
4,187,989	+				+1.3
4,187,990	-				+0.8
4,188,060	+				+0.8
4,188,061	-				+1.0
4,188,061	-				-0.0
4,188,061	-				+0.6
4,188,065	-				-0.2
4,188,065	-				+2.1
4,188,065	-				+1.0
4,188,074	+				-3.4
4,188,127	+				+1.4
4,188,155	-		PP_3684	0.17	+2.1
4,188,183	+		PP_3684	0.26	-0.8
4,188,183	+		PP_3684	0.26	+0.9
4,188,184	-		PP_3684	0.26	+1.7
4,188,199	-		PP_3684	0.31	+1.2
4,188,232	+		PP_3684	0.42	+0.8
4,188,233	-		PP_3684	0.43	-1.7
4,188,325	+		PP_3684	0.73	+1.1
4,188,326	-		PP_3684	0.74	-0.3
4,188,326	-		PP_3684	0.74	+0.6
4,188,326	-		PP_3684	0.74	+0.8
4,188,495	-				-1.4
4,188,647	+				-2.5
4,188,648	-				+0.7
4,188,812	-				+0.8
4,188,846	+		PP_5611	0.13	+1.6
4,188,876	+		PP_5611	0.17	+0.8
4,188,927	+		PP_5611	0.23	+0.3
4,188,928	-		PP_5611	0.23	-2.2
4,188,928	-		PP_5611	0.23	+0.7
4,189,006	-		PP_5611	0.33	+2.3
4,189,006	-		PP_5611	0.33	-0.3
4,189,084	+		PP_5611	0.42	+1.2
4,189,101	+		PP_5611	0.44	+0.7
4,189,122	+		PP_5611	0.47	+0.4
4,189,122	+		PP_5611	0.47	+1.2
4,189,122	+		PP_5611	0.47	-1.1
4,189,123	-				+0.5
4,189,123	-		PP_5611	0.47	-0.2
4,189,123	-		PP_5611	0.47	+0.7
4,189,123	-		PP_5611	0.47	+0.4
4,189,123	-		PP_5611	0.47	+1.1
4,189,124	+		PP_5611	0.47	+0.2
4,189,125	-		PP_5611	0.47	+0.2
4,189,163	+		PP_5611	0.52	+1.5
4,189,164	-		PP_5611	0.52	+1.7
4,189,220	+		PP_5611	0.59	+1.3
4,189,242	+		PP_5611	0.62	-0.8
4,189,242	+		PP_5611	0.62	+1.0
4,189,243	-		PP_5611	0.62	+4.2
4,189,243	-		PP_5611	0.62	+1.5
4,189,243	-		PP_5611	0.62	+1.1
4,189,341	-		PP_5611	0.74	+1.6
4,189,392	+		PP_5611	0.80	+0.8
4,189,392	+		PP_5611	0.80	-2.2
4,189,393	-		PP_5611	0.80	+0.9
4,189,393	-		PP_5611	0.80	+1.4
4,189,393	-		PP_5611	0.80	+1.5
4,189,393	-		PP_5611	0.80	+1.9
4,189,468	+		PP_5611	0.89	+0.9
4,189,468	+		PP_5611	0.89	+0.9
4,189,469	-		PP_5611	0.89	-0.8
4,189,544	-				+0.7
4,189,558	+				-1.2
4,189,558	+				+0.9
4,189,558	+				+0.0
4,189,558	+				+1.5
4,189,558	+				-0.1
4,189,559	-				+0.8
4,189,559	-				+1.3
4,189,565	+				-0.5
4,189,565	+				+1.4
4,189,601	+				-1.1
4,189,616	-				-2.4
4,189,737	+				+0.5
4,189,762	+				+0.5
4,189,762	+				-2.1
4,189,762	+				+0.7
4,189,763	-				-2.2
4,189,793	+		PP_3685	0.16	+2.0
4,189,793	+		PP_3685	0.16	+3.1
4,189,808	+		PP_3685	0.24	+0.6
4,189,844	-		PP_3685	0.44	-2.4
4,189,844	-		PP_3685	0.44	+0.3
4,189,844	-		PP_3685	0.44	+0.3
4,189,844	-		PP_3685	0.44	-1.7
4,189,864	+		PP_3685	0.55	+1.8
4,189,871	-		PP_3685	0.58	+0.3
4,189,871	-		PP_3685	0.58	-1.3
4,189,944	+				-1.5
4,189,944	+				+2.1
4,189,944	+				+0.5
4,189,944	+				+0.5
4,189,944	+				-1.3
4,189,944	+				-0.8
4,189,959	-				-1.0
4,189,959	-				+1.4
4,190,145	+		PP_5612	0.14	+1.1
4,190,145	+		PP_5612	0.14	+0.3
4,190,146	-		PP_5612	0.15	+0.8
4,190,146	-		PP_5612	0.15	+0.7
4,190,308	-		PP_5612	0.41	+0.4
4,190,311	+		PP_5612	0.42	+0.6
4,190,312	-		PP_5612	0.42	+0.7
4,190,349	-		PP_5612	0.48	-0.9
4,190,403	-		PP_5612	0.57	+0.1
4,190,457	+		PP_5612	0.65	-3.2
4,190,500	-		PP_5612	0.72	+0.5
4,190,545	-		PP_5612	0.80	+0.8