Strain Fitness in Pseudomonas putida KT2440 around PP_5602

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,923,937	+		PP_3461	0.39	+0.7
3,924,057	-		PP_3461	0.47	+4.1
3,924,099	-		PP_3461	0.50	-1.7
3,924,223	-		PP_3461	0.59	+0.9
3,924,350	+		PP_3461	0.68	-2.0
3,924,412	-		PP_3461	0.72	+1.2
3,924,461	+		PP_3461	0.75	-1.2
3,924,461	+		PP_3461	0.75	-0.5
3,924,461	+		PP_3461	0.75	+1.4
3,924,461	+		PP_3461	0.75	-0.6
3,924,462	-		PP_3461	0.75	-1.1
3,924,462	-		PP_3461	0.75	-2.2
3,924,462	-		PP_3461	0.75	-2.2
3,924,770	-				-1.1
3,924,770	-				+0.5
3,924,802	+				+1.1
3,924,803	-				-2.7
3,924,805	+				-1.3
3,924,805	+				+1.2
3,924,806	-				-0.9
3,924,806	-				+0.5
3,925,115	+		PP_5602	0.16	-0.1
3,925,116	-		PP_5602	0.16	-0.4
3,925,481	-		PP_5602	0.38	+0.5
3,925,510	+		PP_5602	0.40	-0.1
3,925,558	-		PP_5602	0.43	-0.2
3,925,558	-		PP_5602	0.43	+0.8
3,925,558	-		PP_5602	0.43	-3.1
3,925,640	+		PP_5602	0.48	-1.1
3,925,640	+		PP_5602	0.48	-1.1
3,925,641	-		PP_5602	0.48	-2.6
3,925,649	+		PP_5602	0.48	-0.9
3,925,649	+		PP_5602	0.48	+0.0
3,925,650	-		PP_5602	0.48	-0.2
3,925,683	+		PP_5602	0.50	+0.9
3,925,683	+		PP_5602	0.50	-2.2
3,925,684	-		PP_5602	0.50	+0.6
3,925,694	+		PP_5602	0.51	-2.4
3,925,722	+		PP_5602	0.53	-2.3
3,925,759	+		PP_5602	0.55	-2.1
3,925,759	+		PP_5602	0.55	-1.2
3,925,759	+		PP_5602	0.55	-0.8
3,925,760	-		PP_5602	0.55	+1.0
3,925,760	-		PP_5602	0.55	-2.3
3,925,779	+		PP_5602	0.56	-1.8
3,925,779	+		PP_5602	0.56	+0.1
3,925,779	+		PP_5602	0.56	-3.6
3,925,779	+		PP_5602	0.56	-1.3
3,925,810	+		PP_5602	0.58	+0.1
3,925,810	+		PP_5602	0.58	-0.4
3,925,810	+		PP_5602	0.58	-0.2
3,925,810	+		PP_5602	0.58	-2.8
3,925,810	+		PP_5602	0.58	-2.1
3,925,811	-				+0.7
3,925,811	-		PP_5602	0.58	-1.3
3,925,811	-		PP_5602	0.58	+0.1
3,925,943	+		PP_5602	0.66	+1.0
3,926,086	-		PP_5602	0.75	-0.9
3,926,159	+		PP_5602	0.80	-1.7
3,926,160	-		PP_5602	0.80	-0.9
3,926,274	+		PP_5602	0.87	-1.9
3,926,275	-		PP_5602	0.87	-1.3
3,926,275	-		PP_5602	0.87	-0.7
3,926,276	+		PP_5602	0.87	-1.6
3,926,276	+		PP_5602	0.87	-0.6
3,926,276	+		PP_5602	0.87	-0.0
3,926,276	+		PP_5602	0.87	-1.4
3,926,276	+		PP_5602	0.87	-0.9
3,926,276	+		PP_5602	0.87	+0.1
3,926,276	+		PP_5602	0.87	-1.7
3,926,277	-		PP_5602	0.87	-0.4
3,926,277	-		PP_5602	0.87	-0.5
3,926,277	-		PP_5602	0.87	-2.1
3,926,527	+				+1.1
3,926,528	-				-0.8
3,927,215	+		PP_3463	0.26	-1.1
3,927,215	+		PP_3463	0.26	-0.3
3,927,215	+		PP_3463	0.26	+0.0
3,927,216	-		PP_3463	0.26	-0.8
3,927,216	-		PP_3463	0.26	+0.5
3,927,218	-		PP_3463	0.26	+0.1