Strain Fitness in Pseudomonas putida KT2440 around PP_5591

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,669,438	-				+1.4
3,669,438	-				-1.0
3,669,471	+				-1.8
3,669,471	+				-1.3
3,669,472	-				-0.1
3,669,472	-				+1.1
3,669,674	-				+1.2
3,669,774	+				+0.5
3,669,774	+				+1.9
3,669,775	-				-1.4
3,669,860	+		PP_3233	0.21	+1.9
3,669,860	+		PP_3233	0.21	-2.3
3,670,001	-		PP_3233	0.40	-0.4
3,670,229	+		PP_3233	0.71	+0.9
3,670,295	+		PP_3233	0.80	-0.6
3,670,296	-		PP_3233	0.80	+1.0
3,670,306	+		PP_3233	0.82	+1.3
3,670,459	+				+0.0
3,670,459	+				-1.9
3,670,548	+		PP_5591	0.19	+0.1
3,670,549	-		PP_5591	0.20	-0.2
3,670,549	-		PP_5591	0.20	-1.4
3,670,609	+		PP_5591	0.28	-3.0
3,670,610	-		PP_5591	0.28	-2.7
3,670,610	-		PP_5591	0.28	-2.2
3,670,684	-		PP_5591	0.38	-3.0
3,670,841	+		PP_5591	0.60	-1.0
3,670,841	+		PP_5591	0.60	-1.6
3,670,841	+		PP_5591	0.60	+0.3
3,670,842	-		PP_5591	0.60	-1.4
3,670,842	-		PP_5591	0.60	-2.1
3,671,014	+				+1.9
3,671,015	-		PP_5591	0.84	+0.3
3,671,015	-		PP_5591	0.84	-2.5
3,671,173	+				-1.1
3,671,174	-				-2.5
3,671,303	-		PP_3234	0.15	-0.0
3,671,715	+		PP_3234	0.75	-0.5
3,671,715	+		PP_3234	0.75	-2.3
3,671,716	-		PP_3234	0.75	+1.1
3,671,716	-		PP_3234	0.75	+1.3
3,671,885	+				-0.6
3,671,886	-				+2.6
3,671,941	+				+0.3
3,671,942	-				-1.0
3,671,965	+				+2.9
3,671,966	-				+0.7
3,671,966	-				-1.1
3,671,966	-				+1.3
3,672,000	+		PP_3235	0.13	-1.3
3,672,001	-		PP_3235	0.13	-0.0
3,672,010	+		PP_3235	0.15	-1.4
3,672,011	-		PP_3235	0.16	+2.9
3,672,011	-		PP_3235	0.16	+0.1
3,672,038	-		PP_3235	0.22	+0.3
3,672,038	-		PP_3235	0.22	-1.8