Strain Fitness in Pseudomonas putida KT2440 around PP_5572

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,502,097	+		PP_5568	0.69	+1.7
3,502,097	+		PP_5568	0.69	+1.4
3,502,194	+		PP_5568	0.83	+1.4
3,502,226	+		PP_5568	0.88	+0.4
3,502,247	+				-2.3
3,502,260	+				-1.8
3,502,320	+				-1.0
3,502,320	+				+0.3
3,502,392	+		PP_5569	0.23	+1.7
3,502,402	-		PP_5569	0.27	+0.7
3,502,414	-		PP_5569	0.33	-1.3
3,502,478	-		PP_5569	0.65	-2.3
3,502,478	-				+0.7
3,502,481	+		PP_5569	0.66	-0.3
3,502,520	-		PP_5569	0.85	+1.3
3,502,522	-		PP_5569	0.86	-1.5
3,502,593	+				+0.1
3,502,852	-		PP_5571	0.47	-3.1
3,503,026	-				+1.7
3,503,069	-		PP_5572	0.16	-0.3
3,503,154	+		PP_5572	0.46	+1.3
3,503,169	+		PP_5572	0.51	-2.7
3,503,169	+		PP_5572	0.51	+0.7
3,503,195	-		PP_5572	0.61	-1.7
3,503,427	-				+0.5
3,503,454	-				+1.8
3,503,454	-				-1.2
3,503,586	+				+1.7
3,503,608	-				+0.3
3,503,701	+				+0.1
3,503,762	-				-2.2
3,503,803	-				+1.0
3,503,980	+				-2.3
3,504,010	+				-1.8
3,504,090	+		PP_5573	0.46	+0.4
3,504,207	+				-1.7
3,504,208	-				-0.2
3,504,208	-				+0.7
3,504,214	+				+2.3
3,504,215	-				+1.2
3,504,216	+				-0.2
3,504,217	-				+2.7
3,504,217	-				-0.3