Strain Fitness in Pseudomonas putida KT2440 around PP_5535

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,858,773	+				+0.1
2,858,774	-				-0.0
2,858,797	+				+0.4
2,858,835	-		PP_2511	0.16	-1.8
2,858,835	-		PP_2511	0.16	-3.1
2,859,059	+		PP_2511	0.70	-2.8
2,859,060	-		PP_2511	0.70	-1.9
2,859,192	+				-1.9
2,859,193	-				+1.3
2,859,279	+		PP_2512	0.20	-0.6
2,859,279	+		PP_2512	0.20	+0.5
2,859,280	-		PP_2512	0.20	-0.4
2,859,436	-		PP_2512	0.48	-0.6
2,859,436	-		PP_2512	0.48	-0.7
2,859,457	+		PP_2512	0.52	-0.3
2,859,458	-		PP_2512	0.52	+0.5
2,859,458	-		PP_2512	0.52	-2.0
2,859,458	-		PP_2512	0.52	+0.4
2,859,488	+		PP_2512	0.57	+0.1
2,859,488	+		PP_2512	0.57	+1.2
2,859,489	-		PP_2512	0.57	-1.6
2,859,489	-		PP_2512	0.57	+0.8
2,859,506	-		PP_2512	0.60	-1.2
2,859,512	-		PP_2512	0.61	-0.4
2,859,599	+		PP_2512	0.77	-1.1
2,859,599	+		PP_2512	0.77	-0.0
2,859,599	+		PP_2512	0.77	-0.7
2,859,599	+		PP_2512	0.77	-0.7
2,859,600	-		PP_2512	0.77	+1.9
2,859,600	-		PP_2512	0.77	-2.0
2,859,600	-		PP_2512	0.77	+1.1
2,859,600	-		PP_2512	0.77	-0.4
2,859,600	-		PP_2512	0.77	+0.1
2,859,661	+		PP_2512	0.88	+0.6
2,859,778	+				+0.4
2,859,779	-				-2.7
2,859,779	-				-0.1
2,859,787	-				+0.1
2,859,787	-				-1.1
2,859,815	+		PP_5535	0.11	-0.1
2,859,836	-		PP_5535	0.16	+0.6
2,860,012	+		PP_5535	0.54	+1.7
2,860,012	+		PP_5535	0.54	+0.6
2,860,012	+		PP_5535	0.54	+0.9
2,860,013	-		PP_5535	0.54	-2.0
2,860,014	+		PP_5535	0.54	+1.1
2,860,015	-		PP_5535	0.55	-1.9
2,860,015	-		PP_5535	0.55	+0.5
2,860,015	-		PP_5535	0.55	-1.0
2,860,139	+		PP_5535	0.82	-0.3
2,860,139	+		PP_5535	0.82	-1.9
2,860,237	+				-1.0
2,860,269	+				-1.0
2,860,269	+				-1.0
2,860,467	+				+1.6
2,860,468	-				+1.6
2,860,898	+		PP_2513	0.60	+1.2
2,860,898	+		PP_2513	0.60	-0.3
2,860,899	-		PP_2513	0.60	-1.0
2,861,060	+		PP_2513	0.75	-0.7
2,861,061	-		PP_2513	0.75	+1.8
2,861,102	+		PP_2513	0.79	-1.0
2,861,102	+		PP_2513	0.79	-0.9