Strain Fitness in Pseudomonas putida KT2440 around PP_5533

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,854,774	+		PP_2507	0.75	-2.8
2,854,908	-				+1.4
2,855,051	+				-1.3
2,855,087	+				-1.5
2,855,087	+				+1.4
2,855,087	+				+0.8
2,855,088	-				-2.0
2,855,088	-				+1.7
2,855,088	-				-0.8
2,855,088	-				+0.2
2,855,180	+		PP_5532	0.22	+1.6
2,855,181	-		PP_5532	0.22	+0.6
2,855,246	+		PP_5532	0.47	-0.2
2,855,247	-		PP_5532	0.47	-0.3
2,855,290	+		PP_5532	0.64	-0.2
2,855,290	+		PP_5532	0.64	+1.1
2,855,290	+		PP_5532	0.64	+0.8
2,855,290	+		PP_5532	0.64	+1.7
2,855,290	+		PP_5532	0.64	-3.0
2,855,291	-		PP_5532	0.64	-1.0
2,855,339	+		PP_5532	0.82	+0.7
2,855,339	+				+1.6
2,855,340	-		PP_5532	0.83	-2.0
2,855,340	-		PP_5532	0.83	-0.3
2,855,340	-		PP_5532	0.83	-2.2
2,855,340	-		PP_5532	0.83	-1.5
2,855,340	-		PP_5532	0.83	+1.4
2,855,520	+				-1.7
2,855,520	+				+0.4
2,855,520	+				+0.9
2,855,543	+				-0.9
2,855,578	-		PP_5533	0.18	-1.6
2,855,783	-				-2.6
2,855,807	+				-1.3
2,855,808	-				+1.4
2,855,808	-				-1.7
2,855,808	-				-2.4
2,855,845	+				-2.4
2,855,903	-				+0.7
2,856,173	+				-1.7
2,856,173	+				+0.3
2,856,173	+				-2.4
2,856,174	-				-2.1
2,856,174	-				+1.4
2,856,422	+		PP_5534	0.35	+1.9
2,856,422	+		PP_5534	0.35	+1.3
2,856,422	+		PP_5534	0.35	-1.0
2,856,423	-		PP_5534	0.36	-2.1
2,856,423	-		PP_5534	0.36	+1.3
2,856,423	-		PP_5534	0.36	+0.7
2,856,423	-		PP_5534	0.36	+0.4
2,856,423	-		PP_5534	0.36	-0.1
2,856,423	-		PP_5534	0.36	+0.8
2,856,470	-		PP_5534	0.56	+0.6
2,856,470	-		PP_5534	0.56	-0.9
2,856,470	-		PP_5534	0.56	+1.6
2,856,569	-				+1.0
2,856,576	+				-0.7
2,856,577	-				-0.9
2,856,577	-				+0.2
2,856,653	+		PP_2509	0.52	-0.6
2,856,654	-		PP_2509	0.53	+0.4
2,856,654	-		PP_2509	0.53	+1.7
2,856,658	-		PP_2509	0.55	+0.7
2,856,742	-				-2.0
2,856,742	-				+1.0
2,856,742	-				+0.7
2,856,770	+				-2.6
2,856,771	-				-1.8
2,856,771	-				-0.2
2,856,775	-				+0.2