Strain Fitness in Pseudomonas putida KT2440 around PP_5520

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,683,651	+		PP_2352	0.19	+0.6
2,683,651	+		PP_2352	0.19	-0.5
2,683,672	+		PP_2352	0.21	+2.0
2,683,672	+		PP_2352	0.21	-2.4
2,683,672	+		PP_2352	0.21	+0.7
2,683,776	+		PP_2352	0.30	+0.8
2,683,840	+		PP_2352	0.36	-3.5
2,683,840	+		PP_2352	0.36	-3.1
2,683,840	+		PP_2352	0.36	-0.2
2,683,840	+		PP_2352	0.36	-1.2
2,683,840	+		PP_2352	0.36	-2.9
2,683,841	-		PP_2352	0.36	-2.7
2,683,841	-		PP_2352	0.36	-1.0
2,683,841	-		PP_2352	0.36	-3.3
2,683,841	-		PP_2352	0.36	-0.9
2,683,841	-		PP_2352	0.36	-1.3
2,683,841	-				-0.3
2,683,841	-		PP_2352	0.36	-0.5
2,683,853	+		PP_2352	0.37	-0.0
2,684,007	-		PP_2352	0.51	+0.6
2,684,023	+		PP_2352	0.52	-0.3
2,684,024	-		PP_2352	0.52	-0.2
2,684,024	-		PP_2352	0.52	-0.3
2,684,080	-		PP_2352	0.57	+0.1
2,684,080	-		PP_2352	0.57	-0.0
2,684,299	+		PP_2352	0.76	+1.3
2,684,300	-		PP_2352	0.77	-2.9
2,684,306	-		PP_2352	0.77	-0.1
2,684,571	+				-1.8
2,684,571	+				-1.8
2,684,575	-				+0.2
2,684,575	-				+0.6
2,684,575	-				+0.6
2,684,610	-				-0.6
2,684,641	+				-2.5
2,684,642	-				+0.0
2,684,674	+		PP_5520	0.14	-0.4
2,684,674	+		PP_5520	0.14	-1.5
2,684,674	+		PP_5520	0.14	-2.7
2,684,674	+		PP_5520	0.14	-3.1
2,684,730	-		PP_5520	0.37	+0.4
2,684,780	-		PP_5520	0.58	+0.3
2,684,780	-		PP_5520	0.58	-2.1
2,684,780	-		PP_5520	0.58	-1.7
2,684,912	+				-3.5
2,684,912	+				-0.3
2,685,052	+				+1.1
2,685,229	-				+1.3
2,685,236	-				-3.1
2,685,236	-				-2.4
2,685,236	-				+1.3
2,685,444	-				-3.6
2,685,634	+		PP_2354	0.13	-0.4
2,685,635	-		PP_2354	0.13	-1.0
2,685,673	+		PP_2354	0.14	-3.1
2,685,674	-		PP_2354	0.14	-0.2
2,685,674	-		PP_2354	0.14	-1.3
2,685,752	-		PP_2354	0.18	-1.7
2,685,765	-		PP_2354	0.18	-3.0
2,685,765	-		PP_2354	0.18	-0.4