Strain Fitness in Pseudomonas putida KT2440 around PP_5503

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,426,260	+		PP_2127	0.33	+1.0
2,426,260	+		PP_2127	0.33	+0.1
2,426,260	+		PP_2127	0.33	+0.3
2,426,261	-		PP_2127	0.33	-1.5
2,426,354	+		PP_2127	0.43	-1.0
2,426,670	-		PP_2127	0.76	-0.2
2,426,848	+				-0.8
2,426,848	+				+0.3
2,426,848	+				-2.3
2,426,848	+				-1.2
2,426,848	+				+0.9
2,426,849	-				-0.1
2,426,849	-				+0.1
2,426,849	-				-0.9
2,426,849	-				+1.1
2,426,849	-				-1.1
2,426,852	+				-2.2
2,426,869	+				+0.6
2,426,870	-				-1.1
2,426,943	+				-1.1
2,426,944	-				-2.3
2,426,944	-				-1.1
2,426,944	-				-0.9
2,426,989	+				-1.2
2,426,989	+				-0.5
2,426,990	-				+0.5
2,426,990	-				+3.2
2,426,990	-				+1.0
2,426,990	-				+2.1
2,427,042	-				-0.4
2,427,042	-				-0.5
2,427,092	-				-0.8
2,427,106	+				+0.1
2,427,106	+				-0.7
2,427,106	+				-2.4
2,427,107	-				-0.7
2,427,111	-				-2.5
2,427,195	+				+0.9
2,427,196	-				+0.5
2,427,332	+		PP_5503	0.23	+1.6
2,427,332	+		PP_5503	0.23	-2.2
2,427,332	+		PP_5503	0.23	-1.5
2,427,332	+		PP_5503	0.23	-1.7
2,427,332	+		PP_5503	0.23	-1.2
2,427,332	+		PP_5503	0.23	-2.2
2,427,332	+		PP_5503	0.23	-1.5
2,427,332	+		PP_5503	0.23	-1.1
2,427,525	+		PP_5503	0.60	-2.1
2,427,525	+		PP_5503	0.60	+1.1
2,427,557	-		PP_5503	0.67	+1.3
2,427,557	-		PP_5503	0.67	-2.8
2,427,557	-		PP_5503	0.67	+1.1
2,427,620	+		PP_5503	0.79	+1.0
2,427,620	+		PP_5503	0.79	+1.6
2,427,621	-		PP_5503	0.79	-1.3
2,427,622	+		PP_5503	0.79	-2.4
2,427,622	+		PP_5503	0.79	-1.1
2,427,623	-		PP_5503	0.80	+2.7
2,427,623	-		PP_5503	0.80	-0.1
2,427,623	-		PP_5503	0.80	-0.1
2,427,623	-		PP_5503	0.80	+0.2
2,427,665	+		PP_5503	0.88	-2.8
2,427,665	+		PP_5503	0.88	-1.6
2,427,666	-		PP_5503	0.88	-2.1
2,427,710	+				+0.1
2,427,711	-				-1.2
2,427,777	+				-1.4
2,427,777	+				-2.3
2,427,777	+				-2.0
2,427,778	-				-0.8
2,427,778	-				+0.7
2,427,778	-				+1.2
2,427,781	+				-0.8
2,427,781	+				+1.0
2,427,782	-				+1.5
2,427,782	-				+0.0
2,427,782	-				+2.9
2,427,782	-				+1.2
2,427,782	-				-2.3
2,427,782	-				-1.4
2,427,782	-				-0.9
2,427,826	+				+0.8
2,427,826	+				-2.8
2,427,827	-				-1.3
2,427,827	-				+0.5
2,427,833	+				+1.0
2,428,026	+				-2.9
2,428,033	+				-1.0
2,428,034	-				-1.5
2,428,034	-				-1.2
2,428,034	-				-0.2
2,428,098	+				-2.9
2,428,204	-		PP_2128	0.14	-3.0
2,428,204	-		PP_2128	0.14	-2.9
2,428,247	+		PP_2128	0.18	+1.1
2,428,248	-		PP_2128	0.18	-0.2
2,428,248	-		PP_2128	0.18	-2.3
2,428,248	-		PP_2128	0.18	+1.4
2,428,248	-		PP_2128	0.18	-0.0
2,428,365	-		PP_2128	0.31	-2.7
2,428,365	-		PP_2128	0.31	+0.3
2,428,393	-		PP_2128	0.34	-0.4
2,428,470	-		PP_2128	0.42	-2.7
2,428,551	-		PP_2128	0.51	+0.1
2,428,664	-		PP_2128	0.63	+1.3