Strain Fitness in Pseudomonas putida KT2440 around PP_5497

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,300,689	+		PP_2025	0.46	+0.2
2,300,689	+		PP_2025	0.46	-1.5
2,300,696	+		PP_2025	0.47	-3.7
2,300,885	-		PP_2025	0.62	-1.5
2,301,167	-		PP_2025	0.85	-1.5
2,301,341	+				-0.9
2,301,407	-				-0.4
2,301,460	-				-1.8
2,301,476	+				-3.3
2,301,656	+				-0.3
2,301,656	+				-0.4
2,301,657	-				-3.0
2,301,673	+				-2.5
2,301,708	+				+0.2
2,301,708	+				+1.2
2,301,708	+				-1.5
2,301,708	+				-1.8
2,301,708	+				+1.0
2,301,709	-				-3.0
2,301,709	-				-2.3
2,301,709	-				-1.8
2,301,709	-				-0.7
2,301,709	-				-0.0
2,301,710	+				-0.6
2,301,711	-				-2.2
2,301,711	-				-1.8
2,301,711	-				-2.8
2,301,711	-				-3.1
2,301,711	-				+0.4
2,301,717	+				-2.6
2,301,717	+				-2.7
2,301,718	-				-2.7
2,301,718	-				-2.7
2,301,718	-				-0.3
2,301,724	-				+1.7
2,301,752	-				-2.5
2,301,752	-				-3.0
2,301,795	+		PP_5497	0.17	-0.2
2,301,795	+		PP_5497	0.17	-0.1
2,301,795	+		PP_5497	0.17	-2.7
2,301,795	+		PP_5497	0.17	-3.5
2,301,796	-		PP_5497	0.17	+0.5
2,301,799	+				-0.1
2,301,800	-		PP_5497	0.17	-2.7
2,301,894	+		PP_5497	0.32	-2.0
2,301,895	-		PP_5497	0.32	+0.2
2,301,920	+		PP_5497	0.36	+0.6
2,301,921	-		PP_5497	0.36	-0.1
2,302,018	+		PP_5497	0.51	-1.9
2,302,019	-		PP_5497	0.51	-1.7
2,302,019	-		PP_5497	0.51	-3.1
2,302,019	-		PP_5497	0.51	-1.7
2,302,019	-		PP_5497	0.51	+0.4
2,302,019	-		PP_5497	0.51	-2.1
2,302,022	+		PP_5497	0.51	+0.0
2,302,022	+		PP_5497	0.51	-0.1
2,302,044	+		PP_5497	0.55	-2.2
2,302,054	+		PP_5497	0.56	-2.2
2,302,054	+		PP_5497	0.56	-1.2
2,302,054	+		PP_5497	0.56	-1.7
2,302,055	-		PP_5497	0.56	+0.6
2,302,055	-		PP_5497	0.56	-3.0
2,302,055	-		PP_5497	0.56	-1.5
2,302,077	-		PP_5497	0.60	+0.5
2,302,104	+		PP_5497	0.64	-2.5
2,302,204	+		PP_5497	0.79	-3.1
2,302,338	+				-0.3
2,302,539	-		PP_2026	0.13	-1.5
2,302,632	+		PP_2026	0.48	-0.7
2,302,632	+		PP_2026	0.48	-1.2
2,302,633	-		PP_2026	0.48	-2.2
2,302,633	-		PP_2026	0.48	+0.5
2,302,633	-		PP_2026	0.48	-1.2
2,302,719	+		PP_2026	0.80	-2.3
2,302,719	+		PP_2026	0.80	-1.0
2,302,719	+		PP_2026	0.80	-1.8
2,302,720	-		PP_2026	0.81	-3.6
2,302,720	-		PP_2026	0.81	-2.4
2,302,776	+				-1.1
2,302,867	+				-1.8
2,302,867	+				+1.2
2,302,903	+				+1.2
2,302,904	-				-2.9
2,302,915	+				-2.4
2,302,928	+				-2.4
2,302,929	-				+0.1
2,303,011	+				-1.9
2,303,011	+				-1.0
2,303,012	-				-2.3
2,303,012	-				-3.6
2,303,082	+				-0.3
2,303,083	-				-1.8
2,303,087	+				-1.7
2,303,087	+				-1.5
2,303,088	-				-0.2
2,303,088	-				-2.9
2,303,088	-				-2.0
2,303,096	-				-1.7
2,303,211	+				-2.7
2,303,211	+				+0.3
2,303,211	+				-2.7
2,303,212	-				+1.1
2,303,284	+				+0.7
2,303,284	+				-2.2
2,303,319	+				-1.7
2,303,319	+				-0.1
2,303,319	+				-1.7
2,303,337	+				-2.1
2,303,338	-				-1.7