Strain Fitness in Pseudomonas putida KT2440 around PP_5494

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,215,810	+				+0.5
2,215,813	+				+0.5
2,215,814	-				+1.8
2,215,842	+				+1.4
2,215,845	-				+2.1
2,215,947	+				+1.9
2,215,947	+				+0.7
2,215,948	-				-1.0
2,216,080	-				+1.3
2,216,102	-				+1.1
2,216,116	+				+1.5
2,216,496	-				+0.5
2,216,702	-				+2.4
2,216,781	-		PP_5494	0.12	+1.0
2,216,836	-		PP_5494	0.21	+2.6
2,216,867	+		PP_5494	0.27	-1.3
2,216,868	-		PP_5494	0.27	+2.4
2,216,868	-		PP_5494	0.27	+0.1
2,216,871	+		PP_5494	0.27	+1.6
2,216,901	-		PP_5494	0.33	+2.5
2,217,045	-		PP_5494	0.58	-0.3
2,217,045	-		PP_5494	0.58	+1.2
2,217,060	-		PP_5494	0.61	+1.1
2,217,063	+		PP_5494	0.61	+1.9
2,217,064	-		PP_5494	0.61	-1.3
2,217,064	-		PP_5494	0.61	-0.8
2,217,143	+		PP_5494	0.75	+0.8
2,217,143	+		PP_5494	0.75	+0.3
2,217,144	-		PP_5494	0.75	+2.7
2,217,189	+		PP_5494	0.83	+2.2
2,217,190	-		PP_5494	0.83	+1.5
2,217,190	-		PP_5494	0.83	+4.3
2,217,190	-		PP_5494	0.83	+1.7
2,217,190	-		PP_5494	0.83	+0.6
2,217,196	-		PP_5494	0.84	+0.3
2,217,233	+				-3.4
2,217,258	+				+0.1
2,217,259	-				+2.1
2,217,266	+				-0.2
2,217,266	+				-0.4
2,217,328	-				+1.2
2,217,338	+				+0.8
2,217,339	-				+1.2
2,217,339	-				+2.0
2,217,348	+				-2.5
2,217,376	+				+3.1
2,217,376	+				+0.8
2,217,453	+		PP_1958	0.13	+2.7
2,217,454	-		PP_1958	0.13	+1.9
2,217,454	-		PP_1958	0.13	-0.1
2,217,454	-		PP_1958	0.13	-0.3
2,217,454	-		PP_1958	0.13	+0.5
2,217,454	-		PP_1958	0.13	+1.4
2,217,690	-		PP_1958	0.41	+1.3
2,217,840	+				+1.5
2,217,841	-		PP_1958	0.60	+1.5
2,217,898	+		PP_1958	0.67	-1.3
2,217,898	+		PP_1958	0.67	-2.7
2,217,898	+		PP_1958	0.67	+0.9
2,217,898	+				+1.1
2,217,898	+		PP_1958	0.67	-0.8
2,217,898	+		PP_1958	0.67	-2.8
2,217,899	-		PP_1958	0.67	-1.1
2,217,899	-		PP_1958	0.67	+0.8
2,217,899	-		PP_1958	0.67	-0.0
2,217,899	-		PP_1958	0.67	+1.9
2,217,899	-		PP_1958	0.67	+1.1
2,217,951	+		PP_1958	0.73	+2.0
2,217,986	-		PP_1958	0.77	+1.1
2,217,986	-		PP_1958	0.77	+1.0
2,217,991	+		PP_1958	0.78	-2.5
2,217,991	+		PP_1958	0.78	-0.5
2,217,991	+		PP_1958	0.78	+1.9
2,217,991	+		PP_1958	0.78	-2.4
2,217,992	-		PP_1958	0.78	+1.2
2,217,992	-		PP_1958	0.78	+1.6
2,217,992	-		PP_1958	0.78	+1.7
2,218,038	+		PP_1958	0.83	+0.7
2,218,038	+		PP_1958	0.83	-0.1
2,218,038	+		PP_1958	0.83	+0.3
2,218,039	-		PP_1958	0.84	-1.8
2,218,070	+		PP_1958	0.87	+1.3
2,218,100	+				+2.0
2,218,100	+				+1.2
2,218,100	+				-0.8
2,218,100	+				+0.6
2,218,100	+				+2.1
2,218,101	-				+1.3
2,218,101	-				-2.2
2,218,114	+				+2.8
2,218,114	+				+0.9
2,218,115	-				+0.6
2,218,132	-				-0.4
2,218,132	-				+1.0
2,218,216	-				+0.8
2,218,216	-				+2.2
2,218,277	+				-2.2