Strain Fitness in Pseudomonas putida KT2440 around PP_5482

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,162,316	+				-0.3
2,162,316	+				+0.2
2,162,316	+				-1.3
2,162,316	+				-0.2
2,162,317	-				+1.7
2,162,317	-				+1.1
2,162,342	+				-1.9
2,162,343	-				-2.9
2,162,345	+				-2.5
2,162,345	+				+0.9
2,162,346	-				+1.5
2,162,346	-				-1.8
2,162,454	-				-0.4
2,162,630	-				+0.0
2,162,632	-				+0.6
2,162,632	-				+0.0
2,162,640	-				-1.4
2,162,723	-				+1.4
2,162,723	-				-0.2
2,162,737	+				+0.9
2,162,807	-				+1.9
2,162,873	+				-1.4
2,162,873	+				+0.1
2,162,873	+				+1.7
2,162,874	-				-0.8
2,162,902	+				+1.3
2,162,902	+				-1.2
2,162,902	+				+0.5
2,162,930	+				+1.5
2,162,930	+				+1.0
2,162,930	+				+0.5
2,162,931	-				+1.6
2,162,931	-				-3.2
2,162,937	+				-1.2
2,162,937	+				+1.1
2,162,937	+				-2.6
2,162,937	+				+0.7
2,162,937	+				+0.1
2,162,938	-				+0.4
2,162,938	-				-1.8
2,162,938	-				+0.8
2,162,939	+				+0.8
2,162,939	+				+1.6
2,162,939	+				-2.3
2,162,939	+				+1.2
2,162,939	+				+1.1
2,162,940	-				+1.0
2,162,940	-				-1.2
2,162,940	-				-2.0
2,162,940	-				+1.4
2,162,940	-				-1.6
2,162,940	-				+1.7
2,162,940	-				-0.2
2,162,940	-				+0.2
2,162,965	+				-0.5
2,163,011	+				+1.7
2,163,011	+				-0.4
2,163,011	+				-2.1
2,163,113	+				-0.2
2,163,114	-				-1.0
2,163,114	-				-0.6
2,163,114	-				+0.3
2,163,161	-				+0.1
2,163,188	-				-1.4
2,163,202	-				-0.6
2,163,205	+				+0.6
2,163,206	-				-0.4
2,163,225	+				+0.5
2,163,225	+				+0.6
2,163,225	+				+0.6
2,163,349	+		PP_5482	0.21	-2.9
2,163,383	-		PP_5482	0.24	+1.5
2,163,422	+		PP_5482	0.28	-2.1
2,163,422	+		PP_5482	0.28	-1.0
2,163,452	+		PP_5482	0.31	-2.4
2,163,610	+		PP_5482	0.46	-2.4
2,163,644	-		PP_5482	0.50	-1.6
2,163,646	-		PP_5482	0.50	-3.3
2,163,786	+		PP_5482	0.64	-0.2
2,163,787	-		PP_5482	0.64	+0.6
2,163,897	+		PP_5482	0.75	-3.4
2,163,980	+		PP_5482	0.83	-2.2
2,163,984	-		PP_5482	0.83	+0.1
2,163,984	-		PP_5482	0.83	-2.3
2,164,147	+				+0.9
2,164,148	-				+1.4
2,164,223	+				-0.9
2,164,364	+				+0.4
2,164,424	+				+1.4
2,164,482	+		PP_1920	0.14	-2.2
2,164,599	-		PP_1920	0.23	+0.7
2,164,632	+		PP_1920	0.26	-0.6
2,164,723	-		PP_1920	0.33	+1.5
2,164,738	+		PP_1920	0.34	+0.1
2,164,738	+		PP_1920	0.34	+0.3
2,164,739	-		PP_1920	0.35	+1.4
2,164,739	-		PP_1920	0.35	-0.6
2,164,739	-		PP_1920	0.35	+1.6
2,164,852	+		PP_1920	0.44	-1.4
2,164,931	+		PP_1920	0.50	-2.3
2,165,143	-		PP_1920	0.68	-2.5