Strain Fitness in Pseudomonas putida KT2440 around PP_5464

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,275,031	+				+1.0
1,275,052	+				+1.7
1,275,052	+				+1.2
1,275,052	+				-1.0
1,275,052	+				+1.6
1,275,053	-				+1.0
1,275,116	+				-0.3
1,275,117	-				+1.6
1,275,121	+				+0.1
1,275,122	-				-3.0
1,275,124	+				-3.1
1,275,124	+				+0.6
1,275,218	+		PP_5463	0.18	-0.1
1,275,242	+		PP_5463	0.23	-2.4
1,275,243	-		PP_5463	0.23	-3.8
1,275,250	+		PP_5463	0.24	-1.6
1,275,251	-		PP_5463	0.24	+1.4
1,275,265	+		PP_5463	0.27	+1.5
1,275,265	+		PP_5463	0.27	-2.1
1,275,266	-		PP_5463	0.27	+0.0
1,275,266	-		PP_5463	0.27	+1.4
1,275,266	-		PP_5463	0.27	+0.4
1,275,267	+		PP_5463	0.27	+0.2
1,275,268	-		PP_5463	0.27	+0.1
1,275,268	-		PP_5463	0.27	-0.8
1,275,305	-		PP_5463	0.34	+1.0
1,275,310	+		PP_5463	0.35	-0.8
1,275,310	+		PP_5463	0.35	+1.1
1,275,311	-		PP_5463	0.35	+0.5
1,275,358	+		PP_5463	0.43	-1.8
1,275,358	+		PP_5463	0.43	+1.0
1,275,359	-		PP_5463	0.43	-1.8
1,275,359	-				+1.0
1,275,423	-		PP_5463	0.55	+0.7
1,275,427	-		PP_5463	0.56	+0.0
1,275,427	-		PP_5463	0.56	+2.0
1,275,462	+		PP_5463	0.62	+1.4
1,275,463	-		PP_5463	0.62	+1.1
1,275,471	-		PP_5463	0.63	+0.9
1,275,474	+		PP_5463	0.64	-0.1
1,275,474	+		PP_5463	0.64	-1.0
1,275,498	-		PP_5463	0.68	-0.7
1,275,498	-		PP_5463	0.68	+0.1
1,275,501	+		PP_5463	0.69	+0.6
1,275,502	-		PP_5463	0.69	+0.4
1,275,516	+		PP_5463	0.71	+2.1
1,275,560	-		PP_5463	0.79	+4.6
1,275,597	+		PP_5463	0.86	-3.3
1,275,597	+		PP_5463	0.86	+1.6
1,275,598	-		PP_5463	0.86	-0.1
1,275,598	-		PP_5463	0.86	+0.0
1,275,626	+				+3.1
1,275,703	+				+1.8
1,275,703	+				-1.0
1,275,813	+				+1.5
1,275,814	-				-1.2
1,275,814	-				-0.2
1,275,814	-				-3.3
1,275,903	-				-0.1
1,275,927	-				-0.1
1,275,947	+				+1.0
1,275,966	+				+0.5
1,275,994	+				+3.1
1,275,994	+				-0.0
1,275,994	+				+1.7
1,275,994	+				-0.8
1,275,995	-				-2.1
1,276,079	+		PP_5464	0.14	+2.0
1,276,079	+		PP_5464	0.14	+1.5
1,276,079	+		PP_5464	0.14	-1.0
1,276,080	-		PP_5464	0.14	+0.5
1,276,080	-				+2.0
1,276,099	+		PP_5464	0.19	-0.4
1,276,099	+		PP_5464	0.19	+0.7
1,276,099	+		PP_5464	0.19	+0.9
1,276,100	-		PP_5464	0.19	+1.2
1,276,100	-		PP_5464	0.19	-1.0
1,276,100	-		PP_5464	0.19	-2.3
1,276,148	+		PP_5464	0.30	+2.0
1,276,148	+		PP_5464	0.30	-2.0
1,276,148	+		PP_5464	0.30	+0.8
1,276,155	+		PP_5464	0.32	+1.6
1,276,197	+		PP_5464	0.41	+0.7
1,276,197	+		PP_5464	0.41	+0.6
1,276,197	+		PP_5464	0.41	+0.6
1,276,198	-		PP_5464	0.41	-1.0
1,276,198	-		PP_5464	0.41	+1.2
1,276,198	-		PP_5464	0.41	-0.6
1,276,198	-		PP_5464	0.41	+0.4
1,276,198	-		PP_5464	0.41	-0.7
1,276,198	-		PP_5464	0.41	-0.1
1,276,212	+		PP_5464	0.45	+2.4
1,276,213	-		PP_5464	0.45	-0.2
1,276,270	-		PP_5464	0.58	+0.7
1,276,308	+		PP_5464	0.66	-0.8
1,276,308	+		PP_5464	0.66	-1.3
1,276,309	-		PP_5464	0.67	-2.0
1,276,345	-		PP_5464	0.75	+0.7
1,276,366	+		PP_5464	0.80	+1.5
1,276,377	+		PP_5464	0.82	-0.7
1,276,377	+		PP_5464	0.82	+0.9
1,276,378	-		PP_5464	0.82	+0.6
1,276,408	+		PP_5464	0.89	+2.2
1,276,409	-		PP_5464	0.89	+0.7
1,276,428	+				+1.7
1,276,429	-				+0.0
1,276,518	-				-2.6
1,276,518	-				-1.1
1,276,544	-				-2.7
1,276,585	+				+0.8
1,276,586	-				-2.3
1,276,586	-				+0.0
1,276,598	-				+0.6
1,276,638	+				-2.2
1,276,639	-				-3.4
1,276,648	-				+1.3
1,276,651	-				+0.4
1,276,651	-				+0.2
1,276,660	+				-3.5
1,276,660	+				+1.2
1,276,660	+				+1.3
1,276,660	+				+1.0
1,276,661	-				+0.4
1,276,661	-				+1.0
1,276,661	-				-1.2
1,276,695	+				+1.4
1,276,695	+				+0.0
1,276,730	+		PP_1116	0.10	+1.3
1,276,761	+		PP_1116	0.14	+1.3
1,276,762	-		PP_1116	0.14	+0.4
1,276,829	-		PP_1116	0.24	-1.7
1,276,847	+		PP_1116	0.26	+0.8
1,276,847	+		PP_1116	0.26	-1.1
1,276,847	+		PP_1116	0.26	+1.9
1,276,869	-		PP_1116	0.30	-2.5
1,276,869	-		PP_1116	0.30	+0.7
1,276,869	-		PP_1116	0.30	+0.6
1,276,933	-		PP_1116	0.39	+0.3
1,277,094	+		PP_1116	0.61	-1.0
1,277,095	-		PP_1116	0.61	+0.7
1,277,288	-		PP_1116	0.88	+1.3
1,277,288	-		PP_1116	0.88	+0.9
1,277,310	+				+2.1
1,277,310	+				+1.0
1,277,336	+				+2.4
1,277,340	+				+1.0
1,277,341	-				+1.6
1,277,350	+				+1.3
1,277,351	-				-1.8
1,277,389	-				-0.5
1,277,444	-				+0.5