Strain Fitness in Pseudomonas putida KT2440 around PP_5401

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,156,844	-		PP_5400	0.26	-1.7
6,156,879	-		PP_5400	0.30	-1.7
6,156,925	-		PP_5400	0.34	+0.1
6,156,943	-		PP_5400	0.36	-0.6
6,156,943	-		PP_5400	0.36	+2.0
6,156,943	-		PP_5400	0.36	-0.2
6,156,943	-		PP_5400	0.36	-1.2
6,156,943	-		PP_5400	0.36	+0.1
6,156,943	-		PP_5400	0.36	+2.1
6,156,943	-		PP_5400	0.36	+0.5
6,156,943	-		PP_5400	0.36	+0.8
6,157,055	-		PP_5400	0.46	+0.6
6,157,066	-		PP_5400	0.47	+0.9
6,157,091	-		PP_5400	0.50	+0.1
6,157,140	-		PP_5400	0.54	+1.5
6,157,140	-		PP_5400	0.54	+0.6
6,157,140	-		PP_5400	0.54	+0.6
6,157,140	-		PP_5400	0.54	+0.7
6,157,140	-		PP_5400	0.54	-2.2
6,157,140	-		PP_5400	0.54	-0.6
6,157,214	-		PP_5400	0.61	+1.1
6,157,214	-		PP_5400	0.61	-0.9
6,157,229	-		PP_5400	0.63	-0.8
6,157,238	-		PP_5400	0.63	+1.9
6,157,270	-		PP_5400	0.66	+0.3
6,157,270	-		PP_5400	0.66	+1.0
6,157,270	-		PP_5400	0.66	+1.0
6,157,292	-		PP_5400	0.68	-1.1
6,157,331	-		PP_5400	0.72	+1.1
6,157,411	-		PP_5400	0.80	+1.2
6,157,411	-		PP_5400	0.80	+0.4
6,157,411	-		PP_5400	0.80	-0.3
6,157,484	-		PP_5400	0.86	+1.8
6,157,563	-				+1.1
6,157,563	-				+1.2
6,157,563	-				+1.1
6,157,720	+		PP_5401	0.13	-0.8
6,157,767	-		PP_5401	0.20	-0.8
6,157,804	+		PP_5401	0.26	+1.0
6,157,856	-		PP_5401	0.34	+0.4
6,157,977	+		PP_5401	0.53	+1.2
6,157,999	+		PP_5401	0.56	+3.0
6,158,000	-		PP_5401	0.57	-0.7
6,158,000	-		PP_5401	0.57	+1.1
6,158,008	-		PP_5401	0.58	+0.4
6,158,008	-		PP_5401	0.58	+1.6
6,158,043	+		PP_5401	0.63	-0.1
6,158,059	+		PP_5401	0.66	+1.1
6,158,059	+		PP_5401	0.66	-2.6
6,158,059	+		PP_5401	0.66	+1.3
6,158,143	+		PP_5401	0.79	+1.8
6,158,144	-		PP_5401	0.79	+0.3
6,158,144	-		PP_5401	0.79	+1.8
6,158,152	-		PP_5401	0.80	-0.2
6,158,217	-				+1.2
6,158,254	+				+1.3
6,158,254	+				+2.5
6,158,254	+				-0.2
6,158,255	-				+1.4
6,158,255	-				-0.3
6,158,257	+				-2.8
6,158,258	-				+2.5
6,158,258	-				-1.4
6,158,280	+				-2.1
6,158,280	+				-0.1
6,158,280	+				-1.3
6,158,280	+				+1.2
6,158,280	+				+0.7
6,158,280	+				+0.6
6,158,280	+				-2.5
6,158,280	+				+2.1
6,158,285	-				+0.2
6,158,285	-				+1.5
6,158,285	-				+0.6
6,158,312	+				+0.7
6,158,313	-				-0.8
6,158,326	+				+1.3
6,158,326	+				-0.4
6,158,327	-				+0.6
6,158,392	+				+1.2
6,158,392	+				+1.6
6,158,392	+				-0.3
6,158,393	-				+1.5
6,158,415	-		PP_5739	0.11	+1.8
6,158,429	+		PP_5739	0.16	+0.3
6,158,442	+		PP_5739	0.20	+1.4
6,158,443	-		PP_5739	0.21	+0.3
6,158,457	-		PP_5739	0.26	+0.3
6,158,457	-		PP_5739	0.26	+2.3
6,158,484	-		PP_5739	0.35	-0.4
6,158,495	+		PP_5739	0.39	+0.7
6,158,495	+		PP_5739	0.39	+1.6
6,158,495	+		PP_5739	0.39	+1.2
6,158,495	+		PP_5739	0.39	-1.0
6,158,495	+		PP_5739	0.39	+1.1
6,158,572	+		PP_5739	0.67	+0.7
6,158,572	+		PP_5739	0.67	-0.2
6,158,612	+		PP_5739	0.81	+0.0
6,158,612	+		PP_5739	0.81	+1.1
6,158,685	+				+0.1
6,159,079	+				+0.9
6,159,079	+				+1.6
6,159,079	+				+1.1
6,159,079	+				+0.4
6,159,215	+				+0.7
6,159,227	+				+0.7