Strain Fitness in Pseudomonas putida KT2440 around PP_5387

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,139,331	+		PP_5386	0.36	+0.3
6,139,331	+		PP_5386	0.36	-0.4
6,139,332	-		PP_5386	0.36	+2.1
6,139,422	-		PP_5386	0.42	-1.2
6,139,448	+		PP_5386	0.44	+1.9
6,139,449	-		PP_5386	0.44	-0.9
6,139,509	+				+2.6
6,139,509	+		PP_5386	0.48	+0.8
6,139,509	+		PP_5386	0.48	+0.9
6,139,510	-		PP_5386	0.48	-0.4
6,139,510	-		PP_5386	0.48	+0.7
6,139,510	-		PP_5386	0.48	-2.1
6,139,520	+		PP_5386	0.49	-0.6
6,139,609	+		PP_5386	0.55	-0.9
6,139,647	-		PP_5386	0.58	+0.5
6,139,674	+		PP_5386	0.60	-0.7
6,139,674	+		PP_5386	0.60	+1.2
6,139,674	+		PP_5386	0.60	-2.3
6,139,675	-		PP_5386	0.60	+1.1
6,139,675	-		PP_5386	0.60	+1.1
6,139,675	-		PP_5386	0.60	-0.9
6,139,689	+		PP_5386	0.61	+0.4
6,139,689	+		PP_5386	0.61	+0.8
6,139,800	-		PP_5386	0.68	-0.6
6,139,862	+		PP_5386	0.72	+0.7
6,139,862	+		PP_5386	0.72	-0.3
6,139,862	+		PP_5386	0.72	+0.1
6,139,875	-		PP_5386	0.73	+1.5
6,139,875	-		PP_5386	0.73	+0.5
6,139,875	-		PP_5386	0.73	-0.1
6,139,983	+		PP_5386	0.81	+1.1
6,139,983	+		PP_5386	0.81	+0.9
6,140,463	+				+3.6
6,140,486	-				+0.7
6,140,545	-				-1.2
6,140,574	+				-0.4
6,140,574	+				-2.8
6,140,682	+		PP_5387	0.13	+1.4
6,140,682	+		PP_5387	0.13	-0.1
6,140,683	-		PP_5387	0.13	+1.7
6,140,683	-		PP_5387	0.13	-0.0
6,140,683	-		PP_5387	0.13	+0.2
6,140,711	+		PP_5387	0.14	-0.2
6,140,816	+		PP_5387	0.17	+1.0
6,140,816	+		PP_5387	0.17	+0.9
6,140,817	-		PP_5387	0.17	+0.3
6,140,817	-		PP_5387	0.17	-1.6
6,140,823	+		PP_5387	0.18	+0.5
6,140,823	+		PP_5387	0.18	+0.2
6,140,824	-		PP_5387	0.18	-1.5
6,140,824	-		PP_5387	0.18	-0.1
6,140,834	-		PP_5387	0.18	+0.5
6,141,058	+		PP_5387	0.25	+0.5
6,141,058	+		PP_5387	0.25	-2.8
6,141,058	+		PP_5387	0.25	-2.5
6,141,059	-		PP_5387	0.25	+0.5
6,141,182	+		PP_5387	0.29	+0.4
6,141,183	-		PP_5387	0.29	+0.3
6,141,233	+		PP_5387	0.31	+1.0
6,141,233	+		PP_5387	0.31	+0.1
6,141,233	+		PP_5387	0.31	-1.2
6,141,234	-		PP_5387	0.31	+0.9
6,141,234	-		PP_5387	0.31	+0.2
6,141,234	-		PP_5387	0.31	-2.8
6,141,234	-		PP_5387	0.31	+0.3
6,141,234	-		PP_5387	0.31	+2.4
6,141,234	-		PP_5387	0.31	+2.2
6,141,234	-		PP_5387	0.31	+0.5
6,141,237	+		PP_5387	0.31	+0.8
6,141,237	+		PP_5387	0.31	-1.9
6,141,237	+		PP_5387	0.31	+1.7
6,141,237	+		PP_5387	0.31	-0.4
6,141,237	+				+1.2
6,141,237	+		PP_5387	0.31	+1.3
6,141,237	+		PP_5387	0.31	+2.9
6,141,238	-		PP_5387	0.31	-0.2
6,141,238	-		PP_5387	0.31	+0.6
6,141,238	-		PP_5387	0.31	-0.2
6,141,238	-		PP_5387	0.31	-0.8
6,141,385	+		PP_5387	0.35	-0.5
6,141,385	+		PP_5387	0.35	-0.4
6,141,385	+		PP_5387	0.35	+0.7
6,141,386	-		PP_5387	0.35	+1.1
6,141,386	-		PP_5387	0.35	-0.4
6,141,386	-		PP_5387	0.35	+0.2
6,141,509	+		PP_5387	0.39	+0.4
6,141,510	-		PP_5387	0.39	+0.6
6,141,714	+		PP_5387	0.46	+1.3
6,141,714	+		PP_5387	0.46	-3.2
6,141,714	+		PP_5387	0.46	+1.2
6,141,714	+		PP_5387	0.46	+1.6
6,141,714	+		PP_5387	0.46	+0.6
6,141,714	+		PP_5387	0.46	+0.9
6,141,715	-		PP_5387	0.46	+1.7
6,141,715	-		PP_5387	0.46	+0.6
6,141,715	-		PP_5387	0.46	+0.1
6,141,856	+		PP_5387	0.50	-1.8
6,141,857	-		PP_5387	0.50	-1.0
6,141,857	-		PP_5387	0.50	+0.2
6,141,883	+		PP_5387	0.51	+1.0
6,141,884	-		PP_5387	0.51	+0.1
6,141,884	-		PP_5387	0.51	+1.2
6,141,884	-		PP_5387	0.51	+0.7
6,141,884	-		PP_5387	0.51	+0.3
6,141,884	-		PP_5387	0.51	+0.7
6,141,886	+		PP_5387	0.51	-2.4
6,141,887	-		PP_5387	0.51	+1.0
6,141,887	-		PP_5387	0.51	+0.7
6,141,887	-		PP_5387	0.51	+0.2
6,141,887	-		PP_5387	0.51	+1.2
6,141,895	+		PP_5387	0.52	+0.7
6,141,896	-		PP_5387	0.52	-0.1
6,141,978	+		PP_5387	0.54	+1.3
6,141,978	+		PP_5387	0.54	+0.6
6,141,978	+		PP_5387	0.54	+0.3
6,141,978	+		PP_5387	0.54	-1.5
6,141,978	+		PP_5387	0.54	+0.3
6,141,978	+		PP_5387	0.54	+1.6
6,141,978	+		PP_5387	0.54	-0.4
6,141,978	+		PP_5387	0.54	+0.8
6,141,978	+		PP_5387	0.54	+2.4
6,141,978	+		PP_5387	0.54	-0.8
6,141,978	+		PP_5387	0.54	-0.0
6,141,978	+		PP_5387	0.54	+0.3
6,141,978	+		PP_5387	0.54	-0.1
6,141,978	+		PP_5387	0.54	+1.9
6,141,979	-		PP_5387	0.54	+1.4
6,141,979	-		PP_5387	0.54	+2.5
6,141,979	-		PP_5387	0.54	+1.6
6,141,979	-		PP_5387	0.54	+0.7
6,141,979	-		PP_5387	0.54	-0.8
6,141,979	-		PP_5387	0.54	-2.2
6,141,979	-		PP_5387	0.54	-0.6
6,141,979	-		PP_5387	0.54	+1.1
6,141,979	-		PP_5387	0.54	+1.8
6,141,979	-		PP_5387	0.54	+0.3
6,141,979	-		PP_5387	0.54	+0.2
6,141,979	-		PP_5387	0.54	+1.8
6,141,979	-		PP_5387	0.54	-0.2
6,141,980	+		PP_5387	0.54	+1.0
6,141,980	+				+0.6
6,141,980	+		PP_5387	0.54	-1.0
6,141,981	-		PP_5387	0.54	+2.9
6,141,981	-		PP_5387	0.54	+1.9
6,141,981	-		PP_5387	0.54	-0.6
6,141,981	-		PP_5387	0.54	+0.8
6,142,222	+		PP_5387	0.62	+0.5
6,142,312	+		PP_5387	0.65	+0.1
6,142,385	-		PP_5387	0.67	-0.4
6,142,431	+		PP_5387	0.69	+0.7
6,142,431	+		PP_5387	0.69	-1.9
6,142,431	+		PP_5387	0.69	+0.4
6,142,470	+		PP_5387	0.70	-1.1
6,142,652	+		PP_5387	0.76	-1.1
6,142,737	+		PP_5387	0.78	+1.4
6,142,737	+		PP_5387	0.78	-1.4
6,142,737	+		PP_5387	0.78	-2.6
6,142,738	-		PP_5387	0.78	+0.1
6,142,738	-		PP_5387	0.78	-0.2
6,142,772	-		PP_5387	0.79	-3.2
6,142,813	+		PP_5387	0.81	+1.2
6,142,813	+		PP_5387	0.81	+1.6
6,142,814	-		PP_5387	0.81	+1.6
6,142,836	+		PP_5387	0.81	+0.3
6,142,836	+		PP_5387	0.81	-0.5
6,142,836	+		PP_5387	0.81	-1.9
6,142,836	+		PP_5387	0.81	-2.1
6,142,836	+		PP_5387	0.81	-3.8
6,142,926	+		PP_5387	0.84	-1.7
6,142,926	+		PP_5387	0.84	+1.3
6,142,926	+		PP_5387	0.84	-0.8
6,142,927	-		PP_5387	0.84	+0.2
6,142,927	-		PP_5387	0.84	+1.6
6,143,010	+		PP_5387	0.87	+0.6
6,143,010	+		PP_5387	0.87	-0.6
6,143,010	+		PP_5387	0.87	+4.0
6,143,011	-		PP_5387	0.87	+1.2
6,143,011	-		PP_5387	0.87	+0.8
6,143,103	+		PP_5387	0.90	+0.1
6,143,104	-		PP_5387	0.90	-3.2
6,143,104	-		PP_5387	0.90	+0.6
6,143,104	-		PP_5387	0.90	+1.2
6,143,104	-		PP_5387	0.90	+1.2
6,143,225	+				-0.0
6,143,226	-				+0.3
6,143,242	+				-0.8
6,143,242	+				-0.5
6,143,359	-				+0.1
6,143,359	-				+0.9
6,143,359	-				+0.2
6,143,386	+				+1.1
6,143,386	+				+0.7
6,143,387	-				+0.9
6,143,387	-				+0.2
6,143,387	-				+1.9
6,143,387	-				+0.1
6,143,387	-				-0.7
6,143,389	+				+1.1
6,143,389	+				-0.2
6,143,389	+				+0.3
6,143,390	-				+1.2
6,143,396	+				-0.0
6,143,397	-				-0.6
6,143,432	+				+0.9
6,143,432	+				+1.1
6,143,433	-				+0.1
6,143,433	-				-0.7
6,143,518	+		PP_5388	0.29	+0.3
6,143,518	+		PP_5388	0.29	+1.4
6,143,519	-		PP_5388	0.29	+0.7
6,143,701	-		PP_5388	0.82	+0.2
6,143,701	-		PP_5388	0.82	+0.4
6,143,701	-		PP_5388	0.82	-1.2
6,143,701	-		PP_5388	0.82	-0.6
6,143,701	-		PP_5388	0.82	-1.2
6,143,701	-		PP_5388	0.82	-2.0
6,143,759	+				+1.1
6,143,759	+				+0.8
6,143,760	-				-1.2
6,143,760	-				+1.6
6,143,768	+				+0.6
6,143,772	+				-0.3
6,143,772	+				+1.1
6,143,772	+				-0.2
6,143,772	+				+1.0
6,143,772	+				+0.9
6,143,773	-				-0.5
6,143,773	-				+0.3
6,143,821	-				-0.7
6,143,821	-				+1.4
6,143,847	+				+0.9
6,143,847	+				+0.0
6,143,847	+				-0.6
6,143,848	-				+1.8
6,143,848	-				-0.5
6,143,848	-				+0.5
6,143,848	-				+0.3
6,143,876	-				+0.8
6,143,905	+				+0.3
6,143,906	-				+0.1
6,143,943	-				+1.1
6,144,007	-				+1.8
6,144,007	-				-0.3
6,144,024	-		PP_5734	0.10	-0.2
6,144,072	+		PP_5734	0.20	+0.4
6,144,072	+		PP_5734	0.20	+0.4
6,144,073	-		PP_5734	0.20	-0.7
6,144,073	-		PP_5734	0.20	+0.8
6,144,130	+		PP_5734	0.32	+1.3
6,144,131	-		PP_5734	0.32	+0.5
6,144,131	-		PP_5734	0.32	+1.0
6,144,136	+		PP_5734	0.33	+0.2
6,144,150	+		PP_5734	0.36	-2.1
6,144,186	-		PP_5734	0.43	+0.6
6,144,186	-		PP_5734	0.43	+1.2
6,144,232	+		PP_5734	0.53	+1.0
6,144,232	+		PP_5734	0.53	-0.5
6,144,232	+		PP_5734	0.53	-1.5
6,144,247	+		PP_5734	0.56	-0.3
6,144,259	-		PP_5734	0.58	+0.3
6,144,285	+		PP_5734	0.63	+2.1
6,144,285	+		PP_5734	0.63	+0.7
6,144,285	+		PP_5734	0.63	+0.2
6,144,286	-		PP_5734	0.64	+0.2
6,144,286	-		PP_5734	0.64	-1.5
6,144,286	-		PP_5734	0.64	-2.4
6,144,318	+		PP_5734	0.70	-3.4
6,144,318	+		PP_5734	0.70	+0.4
6,144,318	+		PP_5734	0.70	+0.6
6,144,318	+		PP_5734	0.70	+0.8
6,144,318	+		PP_5734	0.70	-0.8
6,144,318	+		PP_5734	0.70	+1.0
6,144,319	-		PP_5734	0.70	-0.2
6,144,319	-		PP_5734	0.70	-0.6
6,144,319	-		PP_5734	0.70	-2.8
6,144,341	+		PP_5734	0.75	+1.2
6,144,341	+		PP_5734	0.75	-0.0
6,144,342	-		PP_5734	0.75	+0.6
6,144,342	-		PP_5734	0.75	-0.4
6,144,379	+		PP_5734	0.83	+0.4
6,144,382	+		PP_5734	0.83	-2.4
6,144,382	+		PP_5734	0.83	+1.4
6,144,382	+		PP_5734	0.83	-0.3
6,144,383	-		PP_5734	0.83	+1.5
6,144,383	-		PP_5734	0.83	+0.5
6,144,387	+		PP_5734	0.84	+0.0
6,144,387	+		PP_5734	0.84	+0.7
6,144,388	-		PP_5734	0.84	+0.1
6,144,401	+		PP_5734	0.87	-0.2