Strain Fitness in Pseudomonas putida KT2440 around PP_5385

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,136,628	-		PP_5384	0.69	+0.7
6,136,635	+		PP_5384	0.69	+0.7
6,136,636	-		PP_5384	0.69	-0.1
6,136,636	-		PP_5384	0.69	-1.8
6,136,638	+		PP_5384	0.69	+0.9
6,136,638	+		PP_5384	0.69	-0.3
6,136,639	-		PP_5384	0.69	+0.0
6,136,639	-		PP_5384	0.69	+1.4
6,136,639	-		PP_5384	0.69	+0.9
6,136,666	+		PP_5384	0.71	-0.4
6,136,666	+		PP_5384	0.71	+0.7
6,136,736	+		PP_5384	0.76	+0.8
6,136,736	+		PP_5384	0.76	-0.4
6,136,736	+		PP_5384	0.76	-1.0
6,136,736	+		PP_5384	0.76	-2.7
6,136,737	-		PP_5384	0.76	+0.5
6,136,758	+		PP_5384	0.78	-2.6
6,136,759	-		PP_5384	0.78	+3.0
6,136,759	-		PP_5384	0.78	+1.0
6,136,759	-		PP_5384	0.78	-1.1
6,136,885	-		PP_5384	0.87	-0.8
6,136,919	+		PP_5384	0.89	+0.1
6,136,919	+		PP_5384	0.89	+1.8
6,136,919	+		PP_5384	0.89	+2.0
6,136,919	+		PP_5384	0.89	-2.3
6,136,919	+		PP_5384	0.89	+2.2
6,136,919	+		PP_5384	0.89	+0.1
6,136,919	+		PP_5384	0.89	-0.1
6,136,919	+		PP_5384	0.89	+0.7
6,136,920	-		PP_5384	0.89	+0.2
6,136,920	-		PP_5384	0.89	-2.3
6,136,920	-		PP_5384	0.89	+0.9
6,136,920	-		PP_5384	0.89	-0.2
6,136,920	-		PP_5384	0.89	+0.6
6,136,920	-		PP_5384	0.89	-2.1
6,137,007	-				+2.5
6,137,067	+				+1.5
6,137,068	-				+1.5
6,137,079	-				-0.9
6,137,092	+				-0.3
6,137,119	+				+0.5
6,137,119	+				+0.5
6,137,128	+				-2.9
6,137,128	+				+0.2
6,137,128	+				-2.6
6,137,129	-				+1.6
6,137,129	-				-0.2
6,137,191	+		PP_5733	0.24	+0.9
6,137,192	-		PP_5733	0.25	-0.9
6,137,192	-		PP_5733	0.25	+1.2
6,137,225	+		PP_5733	0.34	+0.1
6,137,225	+		PP_5733	0.34	-0.9
6,137,225	+		PP_5733	0.34	-0.4
6,137,226	-		PP_5733	0.34	+1.0
6,137,226	-		PP_5733	0.34	-0.3
6,137,321	+		PP_5733	0.61	-0.3
6,137,321	+		PP_5733	0.61	+1.5
6,137,393	+		PP_5733	0.82	+1.6
6,137,394	-		PP_5733	0.82	+0.1
6,137,397	+		PP_5733	0.83	-0.1
6,137,398	-		PP_5733	0.83	+0.8
6,137,398	-		PP_5733	0.83	-1.1
6,137,413	+		PP_5733	0.87	+0.1
6,137,414	-		PP_5733	0.88	-0.2
6,137,414	-		PP_5733	0.88	+1.1
6,137,414	-		PP_5733	0.88	-0.1
6,137,465	+				-1.0
6,137,466	-				+1.4
6,137,557	-				+1.3
6,137,595	+				-0.5
6,137,596	-				+0.9
6,137,596	-				+0.8
6,137,613	+				+1.2
6,137,807	-		PP_5385	0.21	+1.2
6,137,807	-		PP_5385	0.21	-0.4
6,137,977	+		PP_5385	0.34	+1.1
6,137,977	+		PP_5385	0.34	-0.6
6,137,978	-		PP_5385	0.34	+1.7
6,137,978	-		PP_5385	0.34	-0.7
6,137,984	+		PP_5385	0.35	+0.4
6,137,984	+		PP_5385	0.35	-0.7
6,137,984	+		PP_5385	0.35	-2.5
6,138,182	-		PP_5385	0.51	-2.4
6,138,254	+		PP_5385	0.56	+0.8
6,138,255	-		PP_5385	0.57	+1.3
6,138,255	-		PP_5385	0.57	+4.4
6,138,255	-		PP_5385	0.57	-1.4
6,138,255	-		PP_5385	0.57	+0.3
6,138,285	+		PP_5385	0.59	-0.6
6,138,377	+		PP_5385	0.66	+0.3
6,138,377	+		PP_5385	0.66	-2.4
6,138,377	+		PP_5385	0.66	+1.1
6,138,567	-		PP_5385	0.81	+2.4
6,138,576	+		PP_5385	0.82	-1.9
6,138,577	-		PP_5385	0.82	-1.8
6,138,604	+		PP_5385	0.84	-2.8
6,138,604	+		PP_5385	0.84	-0.3
6,138,675	+				-3.4
6,138,721	-				-1.0
6,138,721	-				-0.8
6,138,727	+				+0.6
6,138,748	-				+1.6
6,138,777	+				-2.4
6,138,777	+				-1.8
6,138,777	+				+0.3
6,138,777	+				+0.3
6,138,777	+				-2.5
6,138,777	+				+0.9
6,138,777	+				-0.5
6,138,778	-				-0.4
6,138,778	-				+2.2
6,138,778	-				+1.3
6,138,778	-				+0.9
6,138,778	-				+3.2
6,138,780	-				-2.6
6,138,810	+				-0.1
6,138,810	+				-0.2
6,138,841	-				-0.1
6,138,859	+				+1.5
6,138,859	+				-1.7
6,138,860	-				-0.4
6,138,860	-				-0.9
6,138,902	+				-1.0
6,138,902	+				-3.2
6,138,903	-				+0.3
6,138,925	+				+0.9
6,138,925	+				+0.7
6,138,926	-				+1.5
6,138,931	+				-0.9
6,138,932	-				-2.9
6,139,139	+		PP_5386	0.23	+1.6
6,139,139	+		PP_5386	0.23	+1.6
6,139,140	-		PP_5386	0.23	-3.4
6,139,140	-		PP_5386	0.23	+2.2
6,139,140	-		PP_5386	0.23	+1.3
6,139,140	-		PP_5386	0.23	+1.1
6,139,169	+		PP_5386	0.25	+1.0
6,139,169	+		PP_5386	0.25	-0.7
6,139,169	+		PP_5386	0.25	+0.9
6,139,170	-		PP_5386	0.25	+1.7
6,139,207	+		PP_5386	0.28	+0.4
6,139,207	+		PP_5386	0.28	+0.5
6,139,208	-		PP_5386	0.28	+0.4
6,139,208	-		PP_5386	0.28	+0.6
6,139,208	-		PP_5386	0.28	-0.4
6,139,208	-		PP_5386	0.28	+0.4
6,139,259	+		PP_5386	0.31	-1.5
6,139,259	+		PP_5386	0.31	+1.5
6,139,260	-		PP_5386	0.32	+1.0
6,139,260	-		PP_5386	0.32	-1.0
6,139,260	-		PP_5386	0.32	+0.1
6,139,331	+		PP_5386	0.36	+0.3
6,139,331	+		PP_5386	0.36	-0.4
6,139,332	-		PP_5386	0.36	+2.1
6,139,422	-		PP_5386	0.42	-1.2
6,139,448	+		PP_5386	0.44	+1.9
6,139,449	-		PP_5386	0.44	-0.9
6,139,509	+				+2.6
6,139,509	+		PP_5386	0.48	+0.8
6,139,509	+		PP_5386	0.48	+0.9
6,139,510	-		PP_5386	0.48	-0.4
6,139,510	-		PP_5386	0.48	+0.7
6,139,510	-		PP_5386	0.48	-2.1
6,139,520	+		PP_5386	0.49	-0.6
6,139,609	+		PP_5386	0.55	-0.9
6,139,647	-		PP_5386	0.58	+0.5
6,139,674	+		PP_5386	0.60	-0.7
6,139,674	+		PP_5386	0.60	+1.2
6,139,674	+		PP_5386	0.60	-2.3
6,139,675	-		PP_5386	0.60	+1.1
6,139,675	-		PP_5386	0.60	+1.1
6,139,675	-		PP_5386	0.60	-0.9
6,139,689	+		PP_5386	0.61	+0.4
6,139,689	+		PP_5386	0.61	+0.8