Strain Fitness in Pseudomonas putida KT2440 around PP_5317

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,062,306	+		PP_5314	0.65	-1.0
6,062,306	+		PP_5314	0.65	-0.5
6,062,306	+		PP_5314	0.65	-0.7
6,062,307	-		PP_5314	0.65	-3.1
6,062,307	-		PP_5314	0.65	-3.4
6,062,332	+		PP_5314	0.68	-1.2
6,062,406	-		PP_5314	0.74	-3.3
6,062,686	+				+0.6
6,062,686	+				-0.5
6,062,686	+				+0.1
6,062,686	+				-0.5
6,062,687	-				+0.3
6,062,722	-				-0.3
6,062,850	+		PP_5315	0.77	+0.7
6,062,851	-		PP_5315	0.78	-0.2
6,062,869	+		PP_5315	0.89	+2.3
6,062,869	+		PP_5315	0.89	-1.9
6,062,869	+		PP_5315	0.89	-0.1
6,062,869	+		PP_5315	0.89	-0.7
6,062,869	+		PP_5315	0.89	+0.1
6,062,894	+				-1.5
6,062,894	+				+0.2
6,062,895	-				+0.4
6,062,895	-				-2.1
6,062,959	+				+1.1
6,062,960	-				-0.9
6,062,960	-				-0.1
6,063,046	+				+0.9
6,063,046	+				+1.3
6,063,046	+				-1.5
6,063,047	-				-3.3
6,063,072	+				-0.5
6,063,072	+				-3.3
6,063,072	+				-1.8
6,063,073	-				-0.9
6,063,095	+				+0.5
6,063,095	+				-0.6
6,063,118	+				+0.2
6,063,118	+				-3.3
6,063,358	+		PP_5317	0.44	-1.0
6,063,359	-		PP_5317	0.44	-0.7
6,063,359	-		PP_5317	0.44	-1.5
6,063,523	+		PP_5317	0.74	-0.6
6,063,524	-		PP_5317	0.74	-0.7
6,064,545	+				-1.2
6,064,546	-				+0.4
6,064,561	+				+1.6
6,064,562	-				-1.5