Strain Fitness in Pseudomonas putida KT2440 around PP_5262

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,006,749	+		PP_5261	0.13	-0.8
6,006,749	+		PP_5261	0.13	-0.7
6,006,750	-		PP_5261	0.13	+0.3
6,006,752	+		PP_5261	0.13	-0.1
6,006,752	+		PP_5261	0.13	-1.8
6,006,753	-		PP_5261	0.13	-1.3
6,006,845	-		PP_5261	0.23	-1.3
6,007,060	+		PP_5261	0.46	-0.5
6,007,060	+		PP_5261	0.46	-1.4
6,007,061	-		PP_5261	0.46	-0.3
6,007,061	-		PP_5261	0.46	+1.1
6,007,061	-		PP_5261	0.46	-0.0
6,007,061	-		PP_5261	0.46	-3.2
6,007,103	-		PP_5261	0.51	+0.1
6,007,279	+		PP_5261	0.70	-0.6
6,007,279	+		PP_5261	0.70	-0.5
6,007,279	+		PP_5261	0.70	-0.3
6,007,279	+		PP_5261	0.70	-3.0
6,007,279	+		PP_5261	0.70	+1.1
6,007,279	+		PP_5261	0.70	-1.4
6,007,280	-		PP_5261	0.70	+0.2
6,007,280	-		PP_5261	0.70	-0.5
6,007,372	-		PP_5261	0.80	+1.1
6,007,431	+		PP_5261	0.86	+0.7
6,007,431	+		PP_5261	0.86	-1.7
6,007,431	+		PP_5261	0.86	+0.2
6,007,532	+				-1.5
6,007,532	+				-2.7
6,007,533	-				-1.7
6,007,603	+				+0.6
6,007,603	+				-1.0
6,007,608	-				-0.8
6,007,877	+		PP_5262	0.12	-1.4
6,007,887	+		PP_5262	0.12	-2.0
6,007,888	-		PP_5262	0.12	+1.3
6,008,228	+		PP_5262	0.37	-1.3
6,008,228	+		PP_5262	0.37	-3.2
6,008,229	-		PP_5262	0.37	-0.4
6,008,229	-		PP_5262	0.37	+0.8
6,008,345	+		PP_5262	0.45	+0.8
6,008,345	+		PP_5262	0.45	+0.7
6,008,345	+		PP_5262	0.45	-0.1
6,008,346	-		PP_5262	0.45	-0.9
6,008,346	-		PP_5262	0.45	-3.4
6,008,346	-		PP_5262	0.45	-0.3
6,008,346	-		PP_5262	0.45	-2.8
6,008,346	-		PP_5262	0.45	+0.1
6,008,346	-		PP_5262	0.45	+1.5
6,008,367	-		PP_5262	0.47	-1.0
6,008,459	+		PP_5262	0.54	-2.0
6,008,459	+		PP_5262	0.54	-1.7
6,008,459	+		PP_5262	0.54	-1.1
6,008,459	+		PP_5262	0.54	-1.3
6,008,459	+		PP_5262	0.54	-0.5
6,008,459	+		PP_5262	0.54	+0.5
6,008,460	-		PP_5262	0.54	-0.6
6,008,460	-		PP_5262	0.54	-1.2
6,008,460	-		PP_5262	0.54	+0.5
6,008,460	-		PP_5262	0.54	-2.0
6,008,460	-		PP_5262	0.54	-1.1
6,008,460	-		PP_5262	0.54	+0.0
6,008,460	-		PP_5262	0.54	-1.9
6,008,460	-		PP_5262	0.54	+0.1
6,008,460	-		PP_5262	0.54	-1.7
6,008,460	-		PP_5262	0.54	-1.8
6,008,460	-		PP_5262	0.54	-1.8
6,008,591	+		PP_5262	0.63	-1.3
6,008,591	+		PP_5262	0.63	-0.8
6,008,592	-		PP_5262	0.63	-2.0
6,008,619	-		PP_5262	0.65	-1.8
6,008,619	-		PP_5262	0.65	+1.3
6,008,622	-		PP_5262	0.65	-0.8
6,008,622	-		PP_5262	0.65	-0.3
6,008,736	+		PP_5262	0.74	+0.2
6,008,737	-		PP_5262	0.74	+0.4
6,008,755	+		PP_5262	0.75	-0.1
6,008,755	+		PP_5262	0.75	-1.6
6,008,755	+		PP_5262	0.75	-2.2
6,008,912	+		PP_5262	0.86	-3.6
6,008,912	+		PP_5262	0.86	-2.4
6,008,912	+		PP_5262	0.86	-0.8
6,009,079	+				+0.7
6,009,080	-				-0.0
6,009,187	-				-0.3
6,009,228	+				-0.4
6,009,229	-				-1.4
6,009,229	-				+0.1
6,009,386	+		PP_5263	0.12	-0.8
6,009,470	+		PP_5263	0.17	-0.9
6,009,471	-		PP_5263	0.17	+0.5
6,009,471	-		PP_5263	0.17	-0.4
6,009,471	-		PP_5263	0.17	-0.3
6,009,471	-		PP_5263	0.17	-2.1
6,009,659	+		PP_5263	0.28	-0.4
6,009,659	+		PP_5263	0.28	-0.4
6,009,660	-		PP_5263	0.28	-1.6
6,009,915	+		PP_5263	0.44	-0.3