Strain Fitness in Pseudomonas putida KT2440 around PP_5260

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
6,004,279	+		PP_5259	0.23	+0.1
6,004,317	+		PP_5259	0.27	+0.4
6,004,317	+		PP_5259	0.27	+0.5
6,004,317	+		PP_5259	0.27	+0.7
6,004,317	+		PP_5259	0.27	-0.3
6,004,317	+		PP_5259	0.27	-3.9
6,004,317	+		PP_5259	0.27	-2.2
6,004,317	+		PP_5259	0.27	-2.3
6,004,317	+		PP_5259	0.27	-4.0
6,004,317	+		PP_5259	0.27	+0.3
6,004,317	+		PP_5259	0.27	-1.3
6,004,317	+		PP_5259	0.27	-1.4
6,004,317	+		PP_5259	0.27	+0.1
6,004,317	+		PP_5259	0.27	-1.3
6,004,318	-		PP_5259	0.28	+0.3
6,004,318	-		PP_5259	0.28	-1.3
6,004,330	+		PP_5259	0.29	-0.4
6,004,330	+		PP_5259	0.29	-1.2
6,004,331	-		PP_5259	0.29	+0.2
6,004,342	+		PP_5259	0.30	-3.0
6,004,343	-		PP_5259	0.30	-0.6
6,004,343	-		PP_5259	0.30	+1.3
6,004,361	+		PP_5259	0.32	+0.2
6,004,361	+		PP_5259	0.32	-3.7
6,004,361	+		PP_5259	0.32	+2.0
6,004,362	-		PP_5259	0.33	-1.9
6,004,362	-		PP_5259	0.33	+1.2
6,004,362	-		PP_5259	0.33	+0.1
6,004,370	+		PP_5259	0.33	-3.3
6,004,370	+		PP_5259	0.33	-2.4
6,004,371	-		PP_5259	0.34	-3.3
6,004,516	+		PP_5259	0.50	+0.1
6,004,517	-		PP_5259	0.50	+0.6
6,004,517	-		PP_5259	0.50	-2.6
6,004,517	-		PP_5259	0.50	-0.5
6,004,720	+		PP_5259	0.73	-1.3
6,004,740	+		PP_5259	0.75	-0.3
6,004,740	+		PP_5259	0.75	-0.6
6,004,741	-		PP_5259	0.75	+2.7
6,004,747	+		PP_5259	0.76	-0.8
6,004,747	+		PP_5259	0.76	+0.9
6,004,747	+		PP_5259	0.76	+0.7
6,004,747	+		PP_5259	0.76	+1.5
6,004,747	+		PP_5259	0.76	+1.3
6,004,747	+		PP_5259	0.76	+1.0
6,004,747	+		PP_5259	0.76	-0.3
6,004,748	-		PP_5259	0.76	+0.1
6,004,748	-		PP_5259	0.76	+0.1
6,004,748	-		PP_5259	0.76	-0.5
6,004,748	-		PP_5259	0.76	-0.5
6,004,748	-		PP_5259	0.76	-2.9
6,004,748	-		PP_5259	0.76	-0.3
6,004,748	-		PP_5259	0.76	-0.1
6,004,748	-		PP_5259	0.76	-0.2
6,004,748	-		PP_5259	0.76	-0.6
6,004,749	+		PP_5259	0.76	-1.0
6,004,749	+		PP_5259	0.76	-0.4
6,004,749	+		PP_5259	0.76	+0.5
6,004,750	-		PP_5259	0.76	-0.2
6,004,801	+		PP_5259	0.82	+1.1
6,004,879	+				+0.2
6,004,880	-				-1.5
6,004,880	-				+0.8
6,004,889	-				-0.6
6,005,133	+				+0.3
6,005,208	-				-0.4
6,005,208	-				-3.6
6,005,229	-				-1.0
6,005,429	+				+1.7
6,005,429	+		PP_5260	0.21	-2.8
6,005,432	+		PP_5260	0.21	-2.9
6,005,433	-		PP_5260	0.21	-3.2
6,005,433	-		PP_5260	0.21	+1.1
6,005,433	-		PP_5260	0.21	-2.2
6,005,433	-		PP_5260	0.21	-0.9
6,005,744	+		PP_5260	0.43	-3.6
6,006,134	+		PP_5260	0.71	-0.4
6,006,134	+		PP_5260	0.71	-2.0
6,006,135	-		PP_5260	0.71	-1.7
6,006,135	-		PP_5260	0.71	-1.8
6,006,135	-		PP_5260	0.71	-0.2
6,006,135	-		PP_5260	0.71	-1.1
6,006,147	+		PP_5260	0.72	-2.4
6,006,209	+		PP_5260	0.77	-0.3
6,006,210	-		PP_5260	0.77	-3.6
6,006,210	-		PP_5260	0.77	-3.2
6,006,219	-		PP_5260	0.77	-0.5
6,006,219	-		PP_5260	0.77	+0.2
6,006,323	+		PP_5260	0.85	-2.4
6,006,324	-		PP_5260	0.85	-0.2
6,006,467	+				-2.2
6,006,468	-				-1.0
6,006,468	-				-0.1
6,006,530	+				-2.0
6,006,530	+				-2.7
6,006,531	-				-0.5
6,006,539	-				-0.6
6,006,583	+				-2.0
6,006,583	+				-0.5
6,006,583	+				-1.7
6,006,749	+		PP_5261	0.13	-0.8
6,006,749	+		PP_5261	0.13	-0.7
6,006,750	-		PP_5261	0.13	+0.3
6,006,752	+		PP_5261	0.13	-0.1
6,006,752	+		PP_5261	0.13	-1.8
6,006,753	-		PP_5261	0.13	-1.3
6,006,845	-		PP_5261	0.23	-1.3
6,007,060	+		PP_5261	0.46	-0.5
6,007,060	+		PP_5261	0.46	-1.4
6,007,061	-		PP_5261	0.46	-0.3
6,007,061	-		PP_5261	0.46	+1.1
6,007,061	-		PP_5261	0.46	-0.0
6,007,061	-		PP_5261	0.46	-3.2
6,007,103	-		PP_5261	0.51	+0.1
6,007,279	+		PP_5261	0.70	-0.6
6,007,279	+		PP_5261	0.70	-0.5
6,007,279	+		PP_5261	0.70	-0.3
6,007,279	+		PP_5261	0.70	-3.0
6,007,279	+		PP_5261	0.70	+1.1
6,007,279	+		PP_5261	0.70	-1.4
6,007,280	-		PP_5261	0.70	+0.2
6,007,280	-		PP_5261	0.70	-0.5
6,007,372	-		PP_5261	0.80	+1.1
6,007,431	+		PP_5261	0.86	+0.7
6,007,431	+		PP_5261	0.86	-1.7
6,007,431	+		PP_5261	0.86	+0.2
6,007,532	+				-1.5
6,007,532	+				-2.7