Strain Fitness in Pseudomonas putida KT2440 around PP_5256

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,998,518	-				-0.9
5,998,518	-				-0.3
5,998,541	+				+1.2
5,998,542	-				-0.9
5,998,786	+		PP_5255	0.43	-0.8
5,998,787	-		PP_5255	0.43	-3.4
5,998,788	-		PP_5255	0.43	+0.1
5,998,901	+		PP_5255	0.61	-0.7
5,998,901	+		PP_5255	0.61	-3.4
5,998,974	+		PP_5255	0.73	-0.9
5,998,974	+		PP_5255	0.73	+1.1
5,998,975	-		PP_5255	0.73	+0.7
5,998,975	-		PP_5255	0.73	+0.1
5,999,099	-				-0.3
5,999,129	+				-0.1
5,999,178	-				-1.2
5,999,233	+				-0.6
5,999,233	+				-0.3
5,999,234	-				-0.7
5,999,237	+				+0.7
5,999,356	+				+1.1
5,999,356	+				+1.7
5,999,426	+				-0.2
5,999,426	+				-3.2
5,999,426	+				+1.9
5,999,426	+				-1.4
5,999,427	-				+0.9
5,999,427	-				-1.9
5,999,427	-				-0.6
5,999,427	-				-0.3
5,999,427	-				-1.0
5,999,427	-				+1.8
5,999,427	-				-2.2
5,999,430	-				-1.1
5,999,430	-				-3.0
5,999,430	-				-0.0
5,999,430	-				-0.8
5,999,430	-				+0.0
5,999,430	-				-2.0
5,999,430	-				-1.0
5,999,432	+				+0.4
5,999,690	-		PP_5256	0.16	-2.5
5,999,737	+		PP_5256	0.19	-1.5
5,999,841	+		PP_5256	0.26	+1.7
6,000,142	+		PP_5256	0.47	+0.1
6,000,259	+		PP_5256	0.56	-1.8
6,000,259	+		PP_5256	0.56	-0.5
6,000,338	+		PP_5256	0.61	+0.1
6,000,339	-		PP_5256	0.61	-2.4
6,000,726	+		PP_5256	0.88	+0.4
6,000,880	-				-4.4
6,000,929	+				-0.2
6,000,929	+				-1.9
6,000,930	-				-2.7
6,000,935	+				+1.0
6,000,935	+				-0.0
6,000,935	+				-0.3
6,000,935	+				+1.7
6,000,935	+				+1.7
6,000,935	+				-0.6
6,000,936	-				-0.4
6,000,936	-				-1.0
6,000,936	-				+0.6
6,000,936	-				-0.4
6,000,969	+				-1.7
6,000,970	-				-0.1
6,000,999	+				-3.3
6,000,999	+				-0.7
6,001,003	+				+0.4
6,001,003	+				-2.5
6,001,003	+				+1.0
6,001,003	+				+0.1
6,001,004	-				-3.7
6,001,004	-				-1.3
6,001,037	-				-3.4
6,001,057	+				-0.2
6,001,057	+				-0.3
6,001,058	-				-3.3
6,001,058	-				-0.3
6,001,058	-				-2.8
6,001,184	+		PP_5257	0.14	-0.2
6,001,198	+		PP_5257	0.15	-0.0
6,001,199	-		PP_5257	0.15	+1.3
6,001,316	-		PP_5257	0.24	-2.3
6,001,318	+		PP_5257	0.24	-0.9
6,001,318	+		PP_5257	0.24	+0.2
6,001,318	+		PP_5257	0.24	+1.1
6,001,318	+		PP_5257	0.24	+0.4
6,001,319	-		PP_5257	0.24	-1.3
6,001,319	-		PP_5257	0.24	-0.4
6,001,473	+		PP_5257	0.36	-2.0
6,001,473	+		PP_5257	0.36	-0.7
6,001,473	+		PP_5257	0.36	-0.2
6,001,474	-		PP_5257	0.36	-0.4
6,001,474	-		PP_5257	0.36	-1.3
6,001,474	-		PP_5257	0.36	+0.4
6,001,474	-		PP_5257	0.36	+0.3
6,001,474	-		PP_5257	0.36	-0.6
6,001,512	+		PP_5257	0.39	-0.7
6,001,512	+		PP_5257	0.39	+0.7
6,001,513	-		PP_5257	0.39	-0.6
6,001,513	-		PP_5257	0.39	-0.4
6,001,519	+		PP_5257	0.40	-2.7
6,001,519	+		PP_5257	0.40	+0.9
6,001,522	+		PP_5257	0.40	-0.0
6,001,522	+		PP_5257	0.40	-1.3
6,001,522	+		PP_5257	0.40	+0.4
6,001,522	+		PP_5257	0.40	+0.4
6,001,523	-		PP_5257	0.40	+0.5
6,001,523	-		PP_5257	0.40	-3.0
6,001,523	-		PP_5257	0.40	-1.9
6,001,523	-		PP_5257	0.40	+1.8
6,001,523	-		PP_5257	0.40	-1.2
6,001,705	-		PP_5257	0.54	+0.5
6,001,705	-		PP_5257	0.54	-0.2
6,001,729	+		PP_5257	0.56	+0.1
6,001,730	-		PP_5257	0.56	-2.0
6,001,798	+		PP_5257	0.61	-0.1