Strain Fitness in Pseudomonas putida KT2440 around PP_5245

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,984,875	+		PP_5243	0.61	+1.1
5,984,875	+		PP_5243	0.61	+0.2
5,984,876	-		PP_5243	0.61	-0.1
5,985,103	+				-2.9
5,985,103	+				+0.3
5,985,103	+				+0.2
5,985,171	+				+0.4
5,985,171	+				+0.5
5,985,182	-				+1.7
5,985,193	-				-2.0
5,985,308	-		PP_5244	0.29	-0.2
5,985,308	-		PP_5244	0.29	+0.3
5,985,463	+		PP_5244	0.67	+0.1
5,985,463	+		PP_5244	0.67	-0.7
5,985,464	-		PP_5244	0.67	+0.4
5,985,549	+		PP_5244	0.88	-0.3
5,985,549	+		PP_5244	0.88	-1.7
5,985,549	+		PP_5244	0.88	-3.7
5,985,550	-		PP_5244	0.89	-1.6
5,985,630	+				+1.0
5,985,631	-				-1.4
5,985,670	+				+1.5
5,985,671	-				-1.5
5,985,671	-				-0.4
5,985,671	-				-0.2
5,985,671	-				-0.6
5,985,684	+				+0.2
5,985,733	+				+1.3
5,985,733	+				-0.8
5,985,733	+				-2.8
5,985,734	-				-2.7
5,985,734	-				-1.1
5,985,734	-				-3.7
5,985,789	+				+2.7
5,985,790	-				+0.8
5,985,898	-		PP_5245	0.17	-0.8
5,985,921	+		PP_5245	0.19	+0.3
5,985,921	+		PP_5245	0.19	-0.7
5,985,995	+		PP_5245	0.26	+0.1
5,985,996	-		PP_5245	0.27	+0.2
5,986,139	+		PP_5245	0.41	+0.2
5,986,196	+		PP_5245	0.47	-1.3
5,986,302	+		PP_5245	0.58	-0.4
5,986,302	+		PP_5245	0.58	-0.8
5,986,303	-		PP_5245	0.58	-2.1
5,986,303	-		PP_5245	0.58	-2.3
5,986,303	-		PP_5245	0.58	-2.9
5,986,311	+		PP_5245	0.58	+0.7
5,986,311	+		PP_5245	0.58	-0.5
5,986,312	-		PP_5245	0.59	+0.3
5,986,412	+		PP_5245	0.69	-0.2
5,986,412	+		PP_5245	0.69	-0.3
5,986,412	+		PP_5245	0.69	-0.4
5,986,412	+		PP_5245	0.69	-1.3
5,986,413	-		PP_5245	0.69	+0.5
5,986,413	-		PP_5245	0.69	+1.0
5,986,414	+		PP_5245	0.69	-1.1
5,986,414	+		PP_5245	0.69	-0.4
5,986,414	+		PP_5245	0.69	+1.0
5,986,532	+		PP_5245	0.81	+0.6
5,986,532	+		PP_5245	0.81	-2.7
5,986,533	-		PP_5245	0.81	-2.5
5,986,558	+		PP_5245	0.83	-0.9
5,986,647	+				+0.0
5,986,682	+				+0.0
5,986,759	+				+0.3
5,986,759	+				-0.6
5,986,759	+				-0.2
5,986,760	-				-1.2
5,986,854	+				+1.1
5,986,855	-				-0.1
5,986,910	+				-0.0
5,987,025	-				-0.3
5,987,490	+		PP_5246	0.32	+0.3
5,987,490	+		PP_5246	0.32	-0.7
5,987,491	-		PP_5246	0.32	-0.0
5,987,491	-		PP_5246	0.32	-0.9
5,987,529	-		PP_5246	0.34	-0.6
5,987,585	-		PP_5246	0.37	-0.8
5,987,604	+		PP_5246	0.38	-2.3
5,987,604	+		PP_5246	0.38	-0.1
5,987,605	-		PP_5246	0.38	-0.7