Strain Fitness in Pseudomonas putida KT2440 around PP_5173

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,897,018	+		PP_5171	0.64	-0.2
5,897,018	+		PP_5171	0.64	-0.0
5,897,018	+		PP_5171	0.64	-1.9
5,897,019	-		PP_5171	0.64	+0.7
5,897,019	-		PP_5171	0.64	-3.1
5,897,243	+		PP_5171	0.86	+0.7
5,897,243	+		PP_5171	0.86	+0.7
5,897,243	+		PP_5171	0.86	-2.6
5,897,243	+		PP_5171	0.86	+0.3
5,897,244	-		PP_5171	0.86	+0.7
5,897,244	-		PP_5171	0.86	-1.1
5,897,244	-		PP_5171	0.86	-1.6
5,897,244	-		PP_5171	0.86	-0.4
5,897,244	-		PP_5171	0.86	+0.3
5,897,252	+		PP_5171	0.87	+0.6
5,897,273	+		PP_5171	0.89	+0.1
5,897,274	-		PP_5171	0.89	+1.1
5,897,274	-		PP_5171	0.89	-0.2
5,897,274	-		PP_5171	0.89	+0.2
5,897,274	-		PP_5171	0.89	-1.4
5,897,274	-		PP_5171	0.89	-0.6
5,897,294	+				-0.6
5,897,294	+				+0.7
5,897,295	-				-0.4
5,897,582	+				-1.3
5,897,582	+				-2.5
5,897,582	+				-2.2
5,897,583	-				+1.0
5,897,583	-				-3.1
5,897,670	+				+0.2
5,897,670	+				-0.6
5,897,671	-				+0.0
5,897,671	-				-2.8
5,897,671	-				+2.7
5,897,671	-				-0.3
5,897,673	+				+1.2
5,897,673	+				+1.0
5,897,673	+				-0.4
5,897,673	+				-2.4
5,897,674	-				-0.1
5,897,674	-				-0.4
5,897,674	-				-0.2
5,897,747	+				-2.9
5,897,748	-				+1.2
5,897,748	-				-1.8
5,897,770	-				+0.5
5,897,865	+				+0.6
5,897,865	+				-2.8
5,897,877	+				+1.7
5,897,940	+				+0.2
5,898,089	+				-0.6
5,898,115	+				-1.8
5,898,307	+		PP_5173	0.15	+0.7
5,898,595	+		PP_5173	0.25	-1.9
5,898,595	+		PP_5173	0.25	-1.5
5,898,648	+		PP_5173	0.27	+2.1
5,898,649	-		PP_5173	0.27	+1.1
5,898,652	+		PP_5173	0.27	-0.6
5,898,652	+		PP_5173	0.27	-3.3
5,898,652	+		PP_5173	0.27	-2.6
5,898,652	+		PP_5173	0.27	+0.3
5,898,652	+		PP_5173	0.27	-1.9
5,898,652	+		PP_5173	0.27	-1.4
5,898,652	+		PP_5173	0.27	-1.6
5,898,652	+		PP_5173	0.27	-0.9
5,898,652	+		PP_5173	0.27	+1.4
5,898,653	-		PP_5173	0.27	-0.6
5,898,653	-		PP_5173	0.27	+1.4
5,898,653	-		PP_5173	0.27	-2.7
5,898,686	+		PP_5173	0.28	+0.9
5,898,686	+		PP_5173	0.28	+1.0
5,898,795	+		PP_5173	0.31	-1.1
5,898,795	+		PP_5173	0.31	-0.5
5,898,796	-		PP_5173	0.31	+0.1
5,899,041	+		PP_5173	0.40	+1.1
5,899,041	+		PP_5173	0.40	-1.3
5,899,044	+		PP_5173	0.40	+0.4
5,899,044	+		PP_5173	0.40	-2.8
5,899,044	+		PP_5173	0.40	-0.3
5,899,044	+		PP_5173	0.40	-1.2
5,899,045	-		PP_5173	0.40	+0.4
5,899,077	+		PP_5173	0.41	-0.1
5,899,078	-		PP_5173	0.41	-0.5
5,899,078	-		PP_5173	0.41	-2.7
5,899,104	+		PP_5173	0.42	-1.0
5,899,104	+		PP_5173	0.42	+0.7
5,899,104	+		PP_5173	0.42	-0.4
5,899,104	+		PP_5173	0.42	-0.6
5,899,105	-		PP_5173	0.42	+0.1
5,899,105	-		PP_5173	0.42	-1.4
5,899,105	-		PP_5173	0.42	-0.2
5,899,105	-		PP_5173	0.42	-0.1
5,899,415	-		PP_5173	0.52	+0.3
5,899,415	-		PP_5173	0.52	-1.0
5,899,503	+		PP_5173	0.55	+0.3
5,899,503	+		PP_5173	0.55	-0.8
5,899,503	+		PP_5173	0.55	-0.6
5,899,503	+		PP_5173	0.55	-1.9
5,899,504	-		PP_5173	0.55	+0.7
5,899,504	-		PP_5173	0.55	-2.9
5,899,504	-		PP_5173	0.55	+0.9
5,899,504	-		PP_5173	0.55	+0.1
5,899,504	-		PP_5173	0.55	-1.4
5,899,570	+		PP_5173	0.57	+1.1
5,899,744	-		PP_5173	0.63	-1.8
5,899,744	-		PP_5173	0.63	+0.5
5,900,052	+		PP_5173	0.73	+0.7
5,900,185	+		PP_5173	0.77	-3.2
5,900,185	+		PP_5173	0.77	+0.3
5,900,185	+		PP_5173	0.77	-1.2
5,900,186	-		PP_5173	0.77	-2.3
5,900,186	-		PP_5173	0.77	-0.2
5,900,320	-		PP_5173	0.81	+0.9
5,900,320	-		PP_5173	0.81	-0.0
5,900,320	-		PP_5173	0.81	-1.8
5,900,403	+		PP_5173	0.84	-4.3
5,900,441	-		PP_5173	0.85	-0.9
5,900,448	+		PP_5173	0.86	-0.5
5,900,448	+		PP_5173	0.86	-1.0
5,900,448	+		PP_5173	0.86	-1.9
5,900,448	+		PP_5173	0.86	-0.2
5,900,448	+		PP_5173	0.86	+2.4
5,900,449	-		PP_5173	0.86	-2.6
5,900,449	-		PP_5173	0.86	-0.0
5,900,449	-		PP_5173	0.86	-2.1
5,900,462	+		PP_5173	0.86	+0.3
5,900,462	+		PP_5173	0.86	-0.4
5,900,462	+		PP_5173	0.86	+0.7
5,900,463	-		PP_5173	0.86	-2.3
5,900,463	-		PP_5173	0.86	-0.3
5,900,463	-		PP_5173	0.86	-0.6
5,900,596	-				+0.8
5,900,601	+				-1.0
5,900,601	+				+1.7
5,900,602	-				+0.3
5,900,602	-				+0.0
5,900,602	-				-0.9
5,900,602	-				-4.1
5,900,628	+				+0.3
5,900,628	+				+0.0
5,900,641	-				-2.1
5,900,641	-				+0.7
5,900,687	-				+0.1
5,900,695	-				+2.4
5,900,790	+				-1.3
5,900,829	+				+0.0
5,900,829	+				+2.1
5,901,048	+		PP_5174	0.15	-1.1
5,901,216	+		PP_5174	0.31	+0.6
5,901,217	-		PP_5174	0.31	-3.2
5,901,429	+		PP_5174	0.51	+1.1
5,901,464	+				+0.1
5,901,465	-		PP_5174	0.54	-2.6
5,901,572	-		PP_5174	0.64	-0.3
5,901,584	+		PP_5174	0.66	-0.7
5,901,584	+		PP_5174	0.66	+1.3
5,901,584	+		PP_5174	0.66	-1.5
5,901,584	+		PP_5174	0.66	-1.1
5,901,585	-		PP_5174	0.66	-3.2
5,901,585	-		PP_5174	0.66	-0.6