Strain Fitness in Pseudomonas putida KT2440 around PP_5130

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,851,706	+		PP_5129	0.46	-3.6
5,851,706	+		PP_5129	0.46	-0.3
5,851,706	+		PP_5129	0.46	-0.0
5,851,957	+		PP_5129	0.69	-3.4
5,852,107	+		PP_5129	0.83	-2.2
5,852,126	-		PP_5129	0.85	+0.3
5,852,130	-		PP_5129	0.85	-0.4
5,852,157	+		PP_5129	0.87	-1.4
5,852,167	-		PP_5129	0.88	-0.5
5,852,167	-		PP_5129	0.88	-0.8
5,852,231	-				-0.6
5,852,240	-				+3.3
5,852,281	+				+0.2
5,852,281	+				-1.8
5,852,294	+				-1.5
5,852,295	-				-1.4
5,852,295	-				+0.1
5,852,295	-				-1.0
5,852,300	+				-2.7
5,852,318	+				+1.7
5,852,318	+				-1.1
5,852,319	-				+0.4
5,852,319	-				-3.1
5,852,319	-				+1.3
5,852,384	+				+1.8
5,852,385	-				-4.1
5,852,555	+				-0.7
5,852,555	+				+0.0
5,852,556	-				-0.3
5,852,556	-				+0.1
5,852,556	-				+0.6
5,852,626	+				-1.2
5,852,626	+				-1.2
5,852,626	+				-0.7
5,852,626	+				-1.3
5,852,627	-				+0.7
5,852,627	-				-1.1
5,852,675	+				-3.5
5,852,676	-				-3.5
5,852,796	+		PP_5130	0.11	-0.3
5,852,796	+		PP_5130	0.11	+0.1
5,852,797	-		PP_5130	0.11	-1.1
5,852,814	-		PP_5130	0.13	-0.4
5,852,865	+		PP_5130	0.17	+0.5
5,852,865	+		PP_5130	0.17	-1.8
5,852,865	+		PP_5130	0.17	-0.3
5,852,925	+		PP_5130	0.23	-1.1
5,852,926	-		PP_5130	0.23	-1.8
5,852,926	-		PP_5130	0.23	-0.1
5,852,926	-		PP_5130	0.23	+2.3
5,852,926	-		PP_5130	0.23	-0.8
5,852,926	-		PP_5130	0.23	-1.4
5,852,926	-		PP_5130	0.23	+1.0
5,852,926	-		PP_5130	0.23	-0.3
5,852,929	+		PP_5130	0.23	-0.8
5,852,930	-		PP_5130	0.24	-0.7
5,852,930	-		PP_5130	0.24	-4.0
5,852,930	-		PP_5130	0.24	+0.8
5,852,980	-		PP_5130	0.28	-0.3
5,853,004	+		PP_5130	0.31	-3.5
5,853,018	+		PP_5130	0.32	+0.1
5,853,018	+		PP_5130	0.32	+0.3
5,853,019	-		PP_5130	0.32	-3.2
5,853,120	+		PP_5130	0.42	+1.9
5,853,120	+		PP_5130	0.42	-2.9
5,853,120	+		PP_5130	0.42	-1.0
5,853,120	+		PP_5130	0.42	+0.3
5,853,121	-		PP_5130	0.42	-0.7
5,853,121	-		PP_5130	0.42	+0.8
5,853,121	-		PP_5130	0.42	+0.4
5,853,126	+		PP_5130	0.42	-0.9
5,853,126	+		PP_5130	0.42	-2.1
5,853,127	-		PP_5130	0.42	-0.7
5,853,127	-		PP_5130	0.42	-0.0
5,853,127	-		PP_5130	0.42	+0.3
5,853,127	-		PP_5130	0.42	+1.2
5,853,127	-		PP_5130	0.42	+0.7
5,853,127	-		PP_5130	0.42	-1.0
5,853,127	-		PP_5130	0.42	-3.6
5,853,183	+		PP_5130	0.48	+0.1
5,853,183	+		PP_5130	0.48	-0.0
5,853,183	+		PP_5130	0.48	-3.1
5,853,183	+		PP_5130	0.48	-2.8
5,853,183	+		PP_5130	0.48	-2.2
5,853,216	+		PP_5130	0.51	-0.4
5,853,216	+		PP_5130	0.51	+0.3
5,853,216	+		PP_5130	0.51	+0.2
5,853,217	-		PP_5130	0.51	-1.0
5,853,217	-		PP_5130	0.51	+0.7
5,853,217	-		PP_5130	0.51	+0.1
5,853,217	-		PP_5130	0.51	-2.7
5,853,217	-		PP_5130	0.51	+1.9
5,853,286	-		PP_5130	0.57	-0.2
5,853,288	+		PP_5130	0.57	-0.3
5,853,288	+		PP_5130	0.57	-0.0
5,853,288	+		PP_5130	0.57	-0.7
5,853,288	+		PP_5130	0.57	-0.6
5,853,289	-		PP_5130	0.58	+0.1
5,853,289	-		PP_5130	0.58	-0.5
5,853,356	-		PP_5130	0.64	+0.3
5,853,356	-		PP_5130	0.64	-2.8
5,853,388	-		PP_5130	0.67	-3.2
5,853,420	+		PP_5130	0.70	+1.7
5,853,421	-		PP_5130	0.70	-1.9
5,853,421	-		PP_5130	0.70	+0.6
5,853,421	-		PP_5130	0.70	-2.0
5,853,423	+		PP_5130	0.70	-1.7
5,853,423	+		PP_5130	0.70	-2.4
5,853,424	-		PP_5130	0.70	+1.3
5,853,424	-		PP_5130	0.70	-1.7
5,853,424	-		PP_5130	0.70	-0.4
5,853,424	-		PP_5130	0.70	-3.2
5,853,424	-		PP_5130	0.70	-0.0
5,853,426	+		PP_5130	0.71	-1.6
5,853,426	+		PP_5130	0.71	+1.0
5,853,506	+		PP_5130	0.78	+0.2
5,853,555	+		PP_5130	0.83	-0.2
5,853,561	+		PP_5130	0.83	-1.8
5,853,591	+		PP_5130	0.86	-2.7
5,853,591	+		PP_5130	0.86	-0.9
5,853,591	+		PP_5130	0.86	+0.2
5,853,595	+		PP_5130	0.87	+0.4
5,853,596	-		PP_5130	0.87	-0.8
5,853,596	-		PP_5130	0.87	+0.3
5,853,596	-		PP_5130	0.87	+1.1
5,853,739	-				+0.9
5,853,739	-				-2.2
5,853,739	-				-1.3
5,853,768	+				-1.5
5,853,769	-				-1.1
5,853,916	-				-1.3
5,854,078	+				+1.3
5,854,078	+				+1.6
5,854,079	-				-0.2
5,854,079	-				-1.1
5,854,079	-				-0.3
5,854,124	+		PP_5131	0.10	-2.3
5,854,124	+		PP_5131	0.10	-0.2
5,854,124	+		PP_5131	0.10	+1.4
5,854,125	-		PP_5131	0.10	+1.4
5,854,125	-		PP_5131	0.10	-0.2
5,854,131	+		PP_5131	0.11	+0.4
5,854,132	-		PP_5131	0.11	-0.9
5,854,195	-		PP_5131	0.15	-0.7
5,854,195	-		PP_5131	0.15	+0.9
5,854,208	-		PP_5131	0.16	-2.7
5,854,723	+		PP_5131	0.53	+1.5
5,854,723	+		PP_5131	0.53	-2.0
5,854,724	-		PP_5131	0.53	+0.4