Strain Fitness in Pseudomonas putida KT2440 around PP_5043

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,745,614	+		PP_5041	0.90	-0.3
5,745,653	+				+2.0
5,745,654	-				-0.4
5,745,791	+				-1.3
5,745,791	+				+2.0
5,745,791	+				+0.2
5,745,791	+				+0.6
5,745,792	-				+1.2
5,745,792	-				+0.7
5,745,792	-				+0.4
5,745,792	-				-0.4
5,745,808	+				+1.6
5,745,809	-				-1.7
5,745,809	-				-1.7
5,745,850	-				-0.0
5,745,913	+				-0.7
5,745,913	+				+1.8
5,745,913	+				+0.0
5,745,914	-				-1.7
5,745,939	+				+0.6
5,745,941	-				+0.4
5,746,043	-				+0.6
5,746,043	-				+1.8
5,746,044	+				+2.0
5,746,044	+				-0.1
5,746,045	-				+1.8
5,746,045	-				-0.0
5,746,045	-				+1.3
5,746,045	-				+1.5
5,746,106	+		PP_5042	0.18	+1.1
5,746,328	+		PP_5042	0.70	-2.8
5,746,329	-		PP_5042	0.70	-0.9
5,746,329	-		PP_5042	0.70	-0.1
5,746,329	-		PP_5042	0.70	+0.3
5,746,361	+		PP_5042	0.78	-0.0
5,746,361	+		PP_5042	0.78	-1.2
5,746,361	+		PP_5042	0.78	-1.0
5,746,361	+		PP_5042	0.78	+1.7
5,746,418	+				-3.4
5,746,471	-				+2.0
5,746,672	+				-2.1
5,746,754	+		PP_5043	0.14	-1.2
5,746,754	+		PP_5043	0.14	+1.0
5,746,755	-		PP_5043	0.14	+0.8
5,746,755	-		PP_5043	0.14	+1.2
5,746,810	+		PP_5043	0.18	-3.4
5,746,810	+		PP_5043	0.18	+0.2
5,746,810	+		PP_5043	0.18	+0.6
5,746,811	-		PP_5043	0.18	-1.8
5,746,822	+		PP_5043	0.19	-0.4
5,746,823	-		PP_5043	0.19	-0.1
5,746,911	+		PP_5043	0.25	+1.9
5,747,018	+		PP_5043	0.33	+2.6
5,747,018	+		PP_5043	0.33	+0.9
5,747,019	-		PP_5043	0.33	+1.1
5,747,019	-		PP_5043	0.33	-0.9
5,747,112	-		PP_5043	0.39	-2.1
5,747,173	+		PP_5043	0.44	+1.0
5,747,173	+		PP_5043	0.44	-0.4
5,747,173	+		PP_5043	0.44	+1.0
5,747,174	-		PP_5043	0.44	+1.0
5,747,174	-		PP_5043	0.44	+0.6
5,747,490	+		PP_5043	0.66	+0.3
5,747,490	+		PP_5043	0.66	-0.1
5,747,491	-		PP_5043	0.66	-2.5
5,747,491	-		PP_5043	0.66	+1.3
5,747,546	+		PP_5043	0.70	+0.0
5,747,546	+		PP_5043	0.70	+0.8
5,747,546	+		PP_5043	0.70	-3.1
5,747,546	+		PP_5043	0.70	+1.0
5,747,546	+		PP_5043	0.70	+1.6
5,747,546	+		PP_5043	0.70	+1.1
5,747,547	-		PP_5043	0.70	+0.1
5,747,547	-		PP_5043	0.70	+0.8
5,747,547	-		PP_5043	0.70	+0.8
5,747,547	-		PP_5043	0.70	+0.2
5,747,547	-		PP_5043	0.70	+0.5
5,747,672	-		PP_5043	0.79	-1.3
5,747,672	-		PP_5043	0.79	+1.0
5,747,672	-		PP_5043	0.79	-1.4
5,747,674	+		PP_5043	0.79	+2.6
5,747,674	+		PP_5043	0.79	-3.1
5,747,674	+		PP_5043	0.79	-2.2
5,747,674	+		PP_5043	0.79	+1.4
5,747,675	-		PP_5043	0.79	+0.5
5,747,675	-		PP_5043	0.79	+0.7
5,747,792	+		PP_5043	0.87	+1.0
5,747,792	+		PP_5043	0.87	+0.1
5,747,792	+		PP_5043	0.87	+0.6
5,747,792	+		PP_5043	0.87	+1.1
5,747,793	-		PP_5043	0.87	+0.9
5,747,793	-		PP_5043	0.87	+0.4
5,747,793	-		PP_5043	0.87	-1.3
5,747,799	+		PP_5043	0.88	+0.1
5,747,799	+		PP_5043	0.88	+0.8
5,747,799	+		PP_5043	0.88	-0.1
5,747,800	-		PP_5043	0.88	+0.5
5,747,801	+		PP_5043	0.88	+0.5
5,747,802	-		PP_5043	0.88	+1.7
5,747,834	+				+0.1
5,747,879	-				+0.4
5,747,901	+				+1.2
5,747,949	+				-0.5
5,747,961	-				-3.8
5,748,006	+				-1.1
5,748,006	+				-0.8
5,748,007	-				+0.8
5,748,007	-				-0.1
5,748,007	-				+3.2
5,748,081	+				-0.6
5,748,155	+				-1.4
5,748,155	+				+1.2
5,748,156	-				-0.2
5,748,156	-				-1.4
5,748,958	+		PP_5044	0.44	+1.6