Strain Fitness in Pseudomonas putida KT2440 around PP_5008

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,704,386	+		PP_5006	0.85	+0.3
5,704,386	+		PP_5006	0.85	-0.4
5,704,386	+		PP_5006	0.85	-1.6
5,704,490	+				-0.2
5,704,490	+				-3.2
5,704,490	+				-1.6
5,704,490	+				+0.8
5,704,490	+				-3.3
5,704,491	-				-0.7
5,704,491	-				+1.9
5,704,491	-				+0.2
5,704,529	+				+0.6
5,704,529	+				+0.9
5,704,550	+				-0.1
5,704,551	-				-0.7
5,704,884	-		PP_5007	0.38	-1.4
5,705,275	+		PP_5007	0.88	-1.0
5,705,279	-		PP_5007	0.88	-1.0
5,705,280	-		PP_5007	0.88	+1.6
5,705,280	-		PP_5007	0.88	-0.0
5,705,384	+				-2.5
5,705,470	-		PP_5008	0.21	-1.6
5,705,703	-		PP_5008	0.76	-2.7
5,705,863	+				+2.7
5,705,863	+				-1.4
5,705,864	-				+1.3
5,705,895	+				-0.8
5,705,896	-				+1.3
5,705,896	-				-0.1
5,705,916	+				-0.7
5,705,916	+				-2.2
5,705,916	+				-2.4
5,705,916	+				+1.6
5,705,916	+				-0.1
5,705,916	+				+1.2
5,705,917	-				-1.2
5,705,917	-				+1.2
5,705,917	-				+0.1
5,705,917	-				-1.6
5,705,917	-				-0.8
5,705,917	-				-0.4
5,705,918	+				-1.1
5,705,918	+				+0.5
5,705,918	+				+0.1
5,705,919	-				+0.2
5,705,919	-				+1.0
5,705,920	+				+1.3
5,705,920	+				-0.8
5,705,920	+				+1.2
5,705,920	+				-1.0
5,705,993	+				+0.4
5,706,071	+				+0.9
5,706,257	+				-0.4
5,706,257	+				+0.7
5,706,258	-				-2.3
5,706,258	-				+0.3
5,706,382	-				+1.9
5,706,401	+				+0.9
5,706,402	-				+0.3
5,706,556	+		PP_5009	0.12	+0.0
5,706,556	+		PP_5009	0.12	-3.0
5,706,556	+		PP_5009	0.12	-1.1
5,706,557	-		PP_5009	0.12	-0.6
5,706,602	+		PP_5009	0.13	+1.9
5,706,602	+		PP_5009	0.13	-0.4
5,706,656	+		PP_5009	0.14	-1.9
5,706,656	+		PP_5009	0.14	-3.0
5,706,656	+		PP_5009	0.14	+0.6
5,706,657	-		PP_5009	0.14	-0.9
5,706,657	-		PP_5009	0.14	+2.7
5,706,657	-		PP_5009	0.14	-0.4
5,706,657	-		PP_5009	0.14	+0.2
5,706,657	-		PP_5009	0.14	-3.1
5,706,657	-		PP_5009	0.14	-0.0
5,706,771	-		PP_5009	0.17	+0.3