Strain Fitness in Pseudomonas putida KT2440 around PP_4995

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,692,163	+		PP_4994	0.59	-0.0
5,692,163	+		PP_4994	0.59	-0.4
5,692,163	+		PP_4994	0.59	-0.0
5,692,163	+		PP_4994	0.59	-0.7
5,692,164	-		PP_4994	0.59	-0.0
5,692,164	-		PP_4994	0.59	+0.6
5,692,229	+		PP_4994	0.67	+1.6
5,692,307	+		PP_4994	0.75	-0.0
5,692,355	+		PP_4994	0.80	+1.6
5,692,356	-		PP_4994	0.81	-1.0
5,692,369	-		PP_4994	0.82	-0.7
5,692,458	+				-0.4
5,692,459	-				-1.6
5,692,525	+				-0.4
5,692,722	+				-1.0
5,692,791	+		PP_4995	0.16	-0.1
5,692,791	+		PP_4995	0.16	-0.0
5,692,791	+		PP_4995	0.16	-1.1
5,692,791	+		PP_4995	0.16	-2.4
5,692,791	+		PP_4995	0.16	-0.4
5,693,038	+		PP_4995	0.59	-2.9
5,693,038	+				-0.0
5,693,038	+		PP_4995	0.59	-2.4
5,693,038	+		PP_4995	0.59	-1.9
5,693,038	+		PP_4995	0.59	-3.8
5,693,038	+		PP_4995	0.59	+0.2
5,693,038	+		PP_4995	0.59	-0.9
5,693,038	+		PP_4995	0.59	+0.6
5,693,038	+		PP_4995	0.59	+0.6
5,693,039	+		PP_4995	0.59	-2.4
5,693,280	+				-1.3
5,693,280	+				-0.3
5,693,689	+				-3.8
5,693,690	-				-1.2
5,693,752	+				-2.0
5,693,835	+		PP_4997	0.17	-3.1
5,693,836	-		PP_4997	0.18	-0.6