Strain Fitness in Pseudomonas putida KT2440 around PP_4942

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,622,736	+		PP_4941	0.29	+4.5
5,622,736	+		PP_4941	0.29	+4.3
5,622,967	+		PP_4941	0.45	+5.0
5,622,968	-		PP_4941	0.45	+0.5
5,622,968	-		PP_4941	0.45	+0.1
5,623,080	-		PP_4941	0.53	-0.5
5,623,093	+		PP_4941	0.54	+4.5
5,623,094	-		PP_4941	0.54	+3.5
5,623,142	+		PP_4941	0.58	+1.5
5,623,143	-		PP_4941	0.58	+1.9
5,623,151	+		PP_4941	0.58	+2.5
5,623,152	-		PP_4941	0.58	+2.8
5,623,152	-		PP_4941	0.58	+1.1
5,623,539	-		PP_4941	0.86	-0.0
5,623,544	+		PP_4941	0.86	+6.3
5,623,544	+		PP_4941	0.86	+3.5
5,623,544	+		PP_4941	0.86	+2.7
5,623,544	+		PP_4941	0.86	+4.7
5,623,544	+		PP_4941	0.86	+7.4
5,623,545	-		PP_4941	0.86	+0.5
5,623,545	-		PP_4941	0.86	+1.0
5,623,562	+		PP_4941	0.87	+0.5
5,623,562	+		PP_4941	0.87	+3.0
5,623,563	-		PP_4941	0.88	+2.5
5,623,563	-		PP_4941	0.88	-0.5
5,623,563	-		PP_4941	0.88	+1.1
5,623,563	-		PP_4941	0.88	-1.0
5,623,563	-		PP_4941	0.88	-0.5
5,623,563	-		PP_4941	0.88	-0.0
5,623,745	-				+6.4
5,623,745	-				+4.7
5,623,775	+				+4.7
5,623,775	+				+6.1
5,623,776	-				+4.3
5,623,776	-				-0.0
5,623,777	+				+5.4
5,623,777	+				+3.7
5,623,921	+		PP_4942	0.21	+2.5
5,624,046	-		PP_4942	0.35	-0.0
5,624,098	+		PP_4942	0.41	+4.0
5,624,098	+		PP_4942	0.41	+4.4
5,624,098	+		PP_4942	0.41	+1.7
5,624,099	-		PP_4942	0.41	+2.5
5,624,142	+		PP_4942	0.45	+1.5
5,624,585	+				-1.0
5,624,618	+				+1.0
5,624,962	-		PP_4943	0.29	+5.2
5,625,262	-		PP_4943	0.56	+5.4
5,625,457	-		PP_4943	0.73	+5.2