Strain Fitness in Pseudomonas putida KT2440 around PP_4941

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,621,416	-				+5.1
5,621,416	-				+6.3
5,621,416	-				+4.9
5,621,543	+		PP_4940	0.22	+6.2
5,621,543	+		PP_4940	0.22	+6.6
5,621,657	+		PP_4940	0.34	+7.0
5,621,657	+		PP_4940	0.34	+6.0
5,621,658	-		PP_4940	0.34	+5.8
5,621,658	-		PP_4940	0.34	+6.2
5,621,658	-		PP_4940	0.34	+5.5
5,621,698	-		PP_4940	0.39	+6.4
5,621,703	+		PP_4940	0.39	+6.9
5,621,703	+		PP_4940	0.39	+5.8
5,621,718	-		PP_4940	0.41	+7.0
5,621,718	-		PP_4940	0.41	+6.1
5,621,718	-		PP_4940	0.41	+6.6
5,621,798	+		PP_4940	0.49	+6.0
5,621,799	-		PP_4940	0.49	+6.1
5,621,799	-		PP_4940	0.49	+6.2
5,621,879	+		PP_4940	0.57	+6.3
5,621,879	+		PP_4940	0.57	+6.8
5,621,879	+		PP_4940	0.57	+5.9
5,621,880	-		PP_4940	0.58	+6.4
5,621,880	-				+7.2
5,621,940	-		PP_4940	0.64	+6.6
5,622,003	-		PP_4940	0.70	+6.0
5,622,003	-		PP_4940	0.70	+6.1
5,622,003	-				+2.1
5,622,017	+		PP_4940	0.72	+5.3
5,622,018	-		PP_4940	0.72	+6.6
5,622,018	-		PP_4940	0.72	+6.1
5,622,018	-		PP_4940	0.72	+7.1
5,622,125	+		PP_4940	0.83	+5.7
5,622,156	-		PP_4940	0.86	+6.8
5,622,230	+				+6.1
5,622,230	+				+6.7
5,622,230	+				+6.6
5,622,275	-				+6.0
5,622,335	+				+5.5
5,622,335	+				+5.4
5,622,335	+				+6.5
5,622,335	+				+6.1
5,622,336	-				-3.1
5,622,336	-				+0.7
5,622,336	-				+1.4
5,622,627	+		PP_4941	0.21	+0.5
5,622,647	+		PP_4941	0.22	+4.1
5,622,648	-		PP_4941	0.22	+1.5
5,622,717	+		PP_4941	0.27	+1.5
5,622,718	-		PP_4941	0.27	+1.5
5,622,718	-		PP_4941	0.27	+3.0
5,622,736	+		PP_4941	0.29	+4.5
5,622,736	+		PP_4941	0.29	+4.3
5,622,967	+		PP_4941	0.45	+5.0
5,622,968	-		PP_4941	0.45	+0.5
5,622,968	-		PP_4941	0.45	+0.1
5,623,080	-		PP_4941	0.53	-0.5
5,623,093	+		PP_4941	0.54	+4.5
5,623,094	-		PP_4941	0.54	+3.5
5,623,142	+		PP_4941	0.58	+1.5
5,623,143	-		PP_4941	0.58	+1.9
5,623,151	+		PP_4941	0.58	+2.5
5,623,152	-		PP_4941	0.58	+2.8
5,623,152	-		PP_4941	0.58	+1.1
5,623,539	-		PP_4941	0.86	-0.0
5,623,544	+		PP_4941	0.86	+6.3
5,623,544	+		PP_4941	0.86	+3.5
5,623,544	+		PP_4941	0.86	+2.7
5,623,544	+		PP_4941	0.86	+4.7
5,623,544	+		PP_4941	0.86	+7.4
5,623,545	-		PP_4941	0.86	+0.5
5,623,545	-		PP_4941	0.86	+1.0
5,623,562	+		PP_4941	0.87	+0.5
5,623,562	+		PP_4941	0.87	+3.0
5,623,563	-		PP_4941	0.88	+2.5
5,623,563	-		PP_4941	0.88	-0.5
5,623,563	-		PP_4941	0.88	+1.1
5,623,563	-		PP_4941	0.88	-1.0
5,623,563	-		PP_4941	0.88	-0.5
5,623,563	-		PP_4941	0.88	-0.0
5,623,745	-				+6.4
5,623,745	-				+4.7
5,623,775	+				+4.7
5,623,775	+				+6.1
5,623,776	-				+4.3
5,623,776	-				-0.0
5,623,777	+				+5.4
5,623,777	+				+3.7
5,623,921	+		PP_4942	0.21	+2.5
5,624,046	-		PP_4942	0.35	-0.0
5,624,098	+		PP_4942	0.41	+4.0
5,624,098	+		PP_4942	0.41	+4.4
5,624,098	+		PP_4942	0.41	+1.7
5,624,099	-		PP_4942	0.41	+2.5
5,624,142	+		PP_4942	0.45	+1.5
5,624,585	+				-1.0
5,624,618	+				+1.0