Strain Fitness in Pseudomonas putida KT2440 around PP_4939

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,619,519	-		PP_4938	0.14	+6.8
5,619,577	+		PP_4938	0.19	+6.2
5,619,634	+				+7.7
5,619,635	-		PP_4938	0.24	+6.5
5,619,640	+		PP_4938	0.24	+7.1
5,619,641	-		PP_4938	0.25	+7.1
5,619,660	-		PP_4938	0.26	+6.9
5,619,660	-		PP_4938	0.26	+7.8
5,619,726	+		PP_4938	0.32	+6.4
5,619,844	+		PP_4938	0.42	+8.0
5,619,844	+		PP_4938	0.42	+7.5
5,619,845	-		PP_4938	0.42	+6.6
5,619,845	-		PP_4938	0.42	+7.5
5,620,120	+		PP_4938	0.67	+6.2
5,620,120	+		PP_4938	0.67	+7.2
5,620,121	-		PP_4938	0.67	+6.7
5,620,121	-		PP_4938	0.67	+6.2
5,620,170	+		PP_4938	0.71	+5.7
5,620,170	+		PP_4938	0.71	+6.0
5,620,287	+		PP_4938	0.81	+4.0
5,620,287	+		PP_4938	0.81	+7.1
5,620,287	+		PP_4938	0.81	+6.7
5,620,287	+		PP_4938	0.81	+5.8
5,620,287	+		PP_4938	0.81	+5.1
5,620,287	+		PP_4938	0.81	+6.1
5,620,287	+		PP_4938	0.81	+5.9
5,620,287	+		PP_4938	0.81	+6.8
5,620,288	-		PP_4938	0.81	+6.5
5,620,288	-		PP_4938	0.81	+5.1
5,620,288	-		PP_4938	0.81	+6.7
5,620,288	-		PP_4938	0.81	+6.4
5,620,288	-		PP_4938	0.81	+6.6
5,620,288	-		PP_4938	0.81	+6.5
5,620,288	-		PP_4938	0.81	+6.1
5,620,288	-		PP_4938	0.81	+6.8
5,620,413	-				+6.6
5,620,413	-				+6.6
5,620,437	+				+6.4
5,620,437	+				+6.8
5,620,437	+				+7.4
5,620,438	-				+7.8
5,620,438	-				+6.2
5,620,438	-				+6.5
5,620,585	+		PP_4939	0.12	+6.2
5,620,585	+		PP_4939	0.12	+6.6
5,620,637	+		PP_4939	0.19	+5.8
5,620,637	+		PP_4939	0.19	+5.1
5,620,637	+		PP_4939	0.19	+6.2
5,620,674	-		PP_4939	0.24	-0.8
5,620,740	+		PP_4939	0.32	+5.0
5,620,857	+		PP_4939	0.47	+3.8
5,620,857	+		PP_4939	0.47	+4.1
5,620,857	+		PP_4939	0.47	+5.4
5,620,857	+		PP_4939	0.47	+5.5
5,620,967	+		PP_4939	0.62	+5.5
5,620,999	-		PP_4939	0.66	-1.3
5,620,999	-		PP_4939	0.66	-1.5
5,621,019	+		PP_4939	0.68	+5.4
5,621,020	-		PP_4939	0.68	-1.4
5,621,020	-		PP_4939	0.68	+1.2
5,621,145	-		PP_4939	0.85	-2.4
5,621,145	-		PP_4939	0.85	+1.3
5,621,281	-				+0.8
5,621,330	+				+4.7
5,621,331	-				-1.1
5,621,416	-				+5.1
5,621,416	-				+6.3
5,621,416	-				+4.9
5,621,543	+		PP_4940	0.22	+6.2
5,621,543	+		PP_4940	0.22	+6.6
5,621,657	+		PP_4940	0.34	+7.0
5,621,657	+		PP_4940	0.34	+6.0
5,621,658	-		PP_4940	0.34	+5.8
5,621,658	-		PP_4940	0.34	+6.2
5,621,658	-		PP_4940	0.34	+5.5
5,621,698	-		PP_4940	0.39	+6.4
5,621,703	+		PP_4940	0.39	+6.9
5,621,703	+		PP_4940	0.39	+5.8
5,621,718	-		PP_4940	0.41	+7.0
5,621,718	-		PP_4940	0.41	+6.1
5,621,718	-		PP_4940	0.41	+6.6
5,621,798	+		PP_4940	0.49	+6.0
5,621,799	-		PP_4940	0.49	+6.1
5,621,799	-		PP_4940	0.49	+6.2
5,621,879	+		PP_4940	0.57	+6.3
5,621,879	+		PP_4940	0.57	+6.8
5,621,879	+		PP_4940	0.57	+5.9
5,621,880	-		PP_4940	0.58	+6.4
5,621,880	-				+7.2
5,621,940	-		PP_4940	0.64	+6.6
5,622,003	-		PP_4940	0.70	+6.0
5,622,003	-		PP_4940	0.70	+6.1
5,622,003	-				+2.1
5,622,017	+		PP_4940	0.72	+5.3
5,622,018	-		PP_4940	0.72	+6.6
5,622,018	-		PP_4940	0.72	+6.1
5,622,018	-		PP_4940	0.72	+7.1
5,622,125	+		PP_4940	0.83	+5.7
5,622,156	-		PP_4940	0.86	+6.8
5,622,230	+				+6.1
5,622,230	+				+6.7
5,622,230	+				+6.6