Strain Fitness in Pseudomonas putida KT2440 around PP_4899

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,568,916	-				-1.9
5,568,916	-				+0.5
5,568,929	-				-1.6
5,568,929	-				-3.7
5,568,936	-				+0.4
5,568,936	-				+0.8
5,568,936	-				-1.8
5,568,936	-				-1.1
5,568,936	-				-0.8
5,568,936	-				-0.3
5,568,938	-				-0.0
5,569,390	-				-2.0
5,569,463	-				-0.7
5,569,687	+		PP_4899	0.35	-2.6
5,569,688	-		PP_4899	0.35	-0.5
5,569,688	-		PP_4899	0.35	-2.0
5,569,690	-		PP_4899	0.35	-2.2
5,569,734	-		PP_4899	0.40	+3.1
5,569,734	-		PP_4899	0.40	-2.0
5,569,786	+		PP_4899	0.46	-1.3
5,569,787	-		PP_4899	0.46	+1.2
5,569,787	-		PP_4899	0.46	+0.5
5,569,894	+		PP_4899	0.59	-1.8
5,569,895	-		PP_4899	0.59	-0.0
5,569,895	-		PP_4899	0.59	-1.0
5,569,895	-				+2.5
5,569,895	-		PP_4899	0.59	-0.5
5,570,138	+		PP_4899	0.87	-0.7
5,570,138	+		PP_4899	0.87	-0.1
5,570,138	+		PP_4899	0.87	-1.0
5,570,138	+		PP_4899	0.87	+0.5
5,570,138	+		PP_4899	0.87	-2.8
5,570,138	+		PP_4899	0.87	-0.3
5,570,138	+		PP_4899	0.87	-2.2
5,570,138	+		PP_4899	0.87	-1.9
5,570,139	-		PP_4899	0.87	-0.2
5,570,139	-		PP_4899	0.87	-0.9
5,570,139	-		PP_4899	0.87	-0.2
5,570,139	-		PP_4899	0.87	-0.5
5,570,139	-		PP_4899	0.87	-1.3
5,570,139	-		PP_4899	0.87	+0.5
5,570,139	-		PP_4899	0.87	-0.0
5,570,139	-		PP_4899	0.87	-1.0
5,570,139	-		PP_4899	0.87	+1.1
5,570,225	-				-2.2
5,570,225	-				-0.4
5,570,279	+				+1.0
5,570,279	+				+0.2
5,570,280	-				-1.9
5,570,280	-				+0.1
5,570,281	+				-0.4
5,570,282	-				-0.7
5,570,282	-				-1.0
5,570,282	-				-0.4
5,570,325	+				-0.8
5,570,326	-				+1.1
5,570,477	-		PP_4900	0.15	+0.7
5,570,535	-		PP_4900	0.21	-0.4
5,570,550	-		PP_4900	0.22	-1.8
5,570,553	+		PP_4900	0.22	+0.1
5,570,553	+		PP_4900	0.22	+0.7
5,570,554	-		PP_4900	0.23	+1.5
5,570,554	-		PP_4900	0.23	-3.3
5,570,554	-		PP_4900	0.23	-1.6
5,570,560	+		PP_4900	0.23	-0.1
5,570,561	-		PP_4900	0.23	+1.4
5,570,561	-		PP_4900	0.23	+2.4
5,570,614	+		PP_4900	0.28	-2.4
5,570,614	+		PP_4900	0.28	-2.0
5,570,614	+		PP_4900	0.28	-2.5
5,570,614	+		PP_4900	0.28	-2.3
5,570,615	-		PP_4900	0.28	+0.1
5,570,615	-		PP_4900	0.28	+0.3
5,570,615	-		PP_4900	0.28	+0.9
5,570,615	-		PP_4900	0.28	-0.3
5,570,644	+		PP_4900	0.31	-0.3
5,570,827	+		PP_4900	0.48	-0.3
5,570,827	+		PP_4900	0.48	-0.5
5,570,827	+		PP_4900	0.48	-1.3
5,570,828	-		PP_4900	0.48	-2.4
5,570,953	+		PP_4900	0.60	-1.0
5,570,953	+		PP_4900	0.60	+1.2
5,570,953	+		PP_4900	0.60	+0.2
5,570,953	+		PP_4900	0.60	+0.6
5,570,953	+		PP_4900	0.60	-1.5
5,570,953	+		PP_4900	0.60	-0.6
5,570,953	+		PP_4900	0.60	+0.6