Strain Fitness in Pseudomonas putida KT2440 around PP_4675

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,313,152	-				-1.8
5,313,152	-				-2.1
5,313,200	+				+2.3
5,313,202	+				+1.0
5,313,212	+				+0.7
5,313,259	-				+1.6
5,313,341	-				-1.9
5,313,341	-				+0.1
5,313,389	-				-2.7
5,313,443	+				-0.9
5,313,463	+		PP_4675	0.11	+0.4
5,313,471	+		PP_4675	0.13	+0.5
5,313,472	-		PP_4675	0.13	+1.7
5,313,472	-		PP_4675	0.13	+0.8
5,313,472	-		PP_4675	0.13	+1.5
5,313,472	-		PP_4675	0.13	+1.2
5,313,472	-		PP_4675	0.13	+0.9
5,313,472	-		PP_4675	0.13	-0.4
5,313,543	+		PP_4675	0.25	-0.0
5,313,543	+		PP_4675	0.25	+0.7
5,313,543	+		PP_4675	0.25	+0.2
5,313,544	-		PP_4675	0.25	-3.4
5,313,594	+		PP_4675	0.34	+1.4
5,313,652	+		PP_4675	0.43	-0.1
5,313,652	+		PP_4675	0.43	+2.0
5,313,652	+		PP_4675	0.43	+4.8
5,313,652	+		PP_4675	0.43	-0.6
5,313,653	-		PP_4675	0.43	-0.4
5,313,657	+		PP_4675	0.44	+1.6
5,313,657	+		PP_4675	0.44	+1.0
5,313,658	-		PP_4675	0.44	+0.7
5,313,710	-		PP_4675	0.53	+1.0
5,313,720	+		PP_4675	0.55	+0.4
5,313,720	+		PP_4675	0.55	+0.0
5,313,721	-		PP_4675	0.55	+2.3
5,313,721	-		PP_4675	0.55	-1.2
5,313,740	+		PP_4675	0.58	+0.6
5,313,740	+		PP_4675	0.58	-2.1
5,313,740	+		PP_4675	0.58	+0.1
5,313,741	-		PP_4675	0.58	+0.9
5,313,741	-		PP_4675	0.58	-0.3
5,313,741	-		PP_4675	0.58	-0.6
5,313,741	-		PP_4675	0.58	-1.0
5,313,741	-		PP_4675	0.58	+1.4
5,313,741	-		PP_4675	0.58	-1.8
5,313,741	-		PP_4675	0.58	-2.9
5,313,742	+		PP_4675	0.58	-0.5
5,313,742	+		PP_4675	0.58	+0.9
5,313,742	+		PP_4675	0.58	-0.4
5,313,742	+		PP_4675	0.58	-0.3
5,313,742	+		PP_4675	0.58	+1.4
5,313,742	+		PP_4675	0.58	-2.7
5,313,742	+		PP_4675	0.58	+0.4
5,313,742	+		PP_4675	0.58	-0.1
5,313,743	-		PP_4675	0.59	+0.8
5,313,743	-		PP_4675	0.59	-0.0
5,313,743	-		PP_4675	0.59	+1.7
5,313,743	-				+1.4
5,313,743	-		PP_4675	0.59	-1.0
5,313,743	-		PP_4675	0.59	-0.1
5,313,743	-				+0.4
5,313,743	-		PP_4675	0.59	-1.8
5,313,744	+		PP_4675	0.59	+0.8
5,313,744	+		PP_4675	0.59	-0.5
5,313,744	+		PP_4675	0.59	+0.6
5,313,744	+		PP_4675	0.59	+0.2
5,313,744	+		PP_4675	0.59	+4.8
5,313,745	-		PP_4675	0.59	+0.9
5,313,745	-		PP_4675	0.59	+1.2
5,313,745	-		PP_4675	0.59	+0.9
5,313,745	-		PP_4675	0.59	-3.6
5,313,745	-		PP_4675	0.59	+0.7
5,313,745	-		PP_4675	0.59	+2.0
5,313,745	-		PP_4675	0.59	+0.6
5,313,745	-		PP_4675	0.59	+1.4
5,313,847	+		PP_4675	0.76	-0.3
5,313,848	-		PP_4675	0.76	+0.2
5,313,921	+		PP_4675	0.89	+0.7
5,313,921	+		PP_4675	0.89	-1.8
5,313,921	+		PP_4675	0.89	-0.4
5,313,921	+		PP_4675	0.89	-1.0
5,313,922	-		PP_4675	0.89	+1.1
5,313,922	-		PP_4675	0.89	-3.4
5,313,922	-		PP_4675	0.89	-0.2
5,313,922	-		PP_4675	0.89	-0.6
5,313,922	-		PP_4675	0.89	-0.6
5,313,923	+		PP_4675	0.89	-0.5
5,313,923	+		PP_4675	0.89	+1.7
5,313,923	+		PP_4675	0.89	+1.1
5,313,923	+		PP_4675	0.89	+1.2
5,313,923	+		PP_4675	0.89	-3.0
5,313,923	+		PP_4675	0.89	+1.2
5,313,924	-		PP_4675	0.89	-2.4
5,313,924	-		PP_4675	0.89	+1.0
5,313,951	-				+0.2
5,313,992	+				-1.8
5,313,992	+				+0.4
5,313,992	+				+3.7
5,314,019	+				-0.6
5,314,019	+				-0.2
5,314,019	+				+0.9
5,314,020	-				+1.0
5,314,020	-				+1.0
5,314,044	-				+1.2
5,314,044	-				+0.1
5,314,044	-				+0.3
5,314,044	-				+0.6
5,314,157	+		PP_4676	0.16	-3.9
5,314,158	-		PP_4676	0.17	-1.1
5,314,166	+		PP_4676	0.17	-1.7
5,314,166	+		PP_4676	0.17	+0.2
5,314,167	-		PP_4676	0.17	+1.6
5,314,167	-		PP_4676	0.17	+1.3
5,314,194	+		PP_4676	0.20	+2.2
5,314,194	+		PP_4676	0.20	-1.3
5,314,256	+		PP_4676	0.26	-0.3
5,314,257	-		PP_4676	0.26	-3.8
5,314,315	+		PP_4676	0.32	-0.2
5,314,316	+		PP_4676	0.32	+0.8
5,314,316	+		PP_4676	0.32	+0.8
5,314,317	-		PP_4676	0.32	-0.4
5,314,317	-		PP_4676	0.32	+0.8
5,314,317	-		PP_4676	0.32	+0.1
5,314,320	+		PP_4676	0.32	+1.9
5,314,320	+		PP_4676	0.32	+0.4
5,314,320	+		PP_4676	0.32	-0.3
5,314,321	-		PP_4676	0.32	-0.3
5,314,321	-		PP_4676	0.32	-0.3
5,314,377	+		PP_4676	0.38	-2.3
5,314,377	+		PP_4676	0.38	-2.0
5,314,377	+		PP_4676	0.38	-3.4
5,314,378	-		PP_4676	0.38	+0.9
5,314,378	-		PP_4676	0.38	-0.6
5,314,378	-		PP_4676	0.38	-0.2
5,314,378	-		PP_4676	0.38	+0.0
5,314,422	+		PP_4676	0.42	+0.6
5,314,422	+		PP_4676	0.42	+0.1
5,314,422	+		PP_4676	0.42	+0.5
5,314,422	+		PP_4676	0.42	-0.7
5,314,422	+		PP_4676	0.42	+0.3
5,314,423	-		PP_4676	0.42	-0.5
5,314,423	-		PP_4676	0.42	-2.1
5,314,457	+		PP_4676	0.46	-1.0
5,314,457	+		PP_4676	0.46	-0.4
5,314,458	-		PP_4676	0.46	+1.5
5,314,543	+		PP_4676	0.54	-1.8
5,314,544	-		PP_4676	0.54	-0.0
5,314,544	-		PP_4676	0.54	-0.0
5,314,559	+		PP_4676	0.56	+1.3
5,314,607	+		PP_4676	0.60	-0.2
5,314,607	+		PP_4676	0.60	+0.2
5,314,608	-		PP_4676	0.60	+0.7
5,314,608	-		PP_4676	0.60	+0.3
5,314,713	-		PP_4676	0.71	-1.0
5,314,713	-		PP_4676	0.71	+0.1
5,314,713	-		PP_4676	0.71	-2.4
5,314,724	+		PP_4676	0.72	+0.5
5,314,724	+		PP_4676	0.72	+2.1
5,314,724	+		PP_4676	0.72	+0.1
5,314,724	+		PP_4676	0.72	+2.0
5,314,845	-		PP_4676	0.84	+0.7
5,314,889	-		PP_4676	0.88	+1.4
5,314,937	+				-0.1
5,314,938	-				+0.5
5,314,938	-				-0.3
5,314,938	-				-2.5