Strain Fitness in Pseudomonas putida KT2440 around PP_4543

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4542 and PP_4543 are separated by 105 nucleotidesPP_4543 and PP_4544 are separated by 178 nucleotides PP_4542: PP_4542 - putative ABC transporter, ATP-binding protein/permease protein, at 5,157,905 to 5,159,737 _4542 PP_4543: PP_4543 - conserved protein of unknown function, at 5,159,843 to 5,161,054 _4543 PP_4544: PP_4544 - conserved exported protein of unknown function, at 5,161,233 to 5,162,477 _4544 Position (kb) 5159 5160 5161 5162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5159.015 kb on + strand, within PP_4542at 5159.037 kb on + strand, within PP_4542at 5159.037 kb on + strand, within PP_4542at 5159.037 kb on + strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.038 kb on - strand, within PP_4542at 5159.138 kb on + strand, within PP_4542at 5159.138 kb on + strand, within PP_4542at 5159.138 kb on + strand, within PP_4542at 5159.236 kb on + strand, within PP_4542at 5159.237 kb on - strand, within PP_4542at 5159.276 kb on + strand, within PP_4542at 5159.687 kb on + strandat 5159.687 kb on + strandat 5159.688 kb on - strandat 5159.688 kb on - strandat 5159.774 kb on - strandat 5159.794 kb on + strandat 5159.795 kb on - strandat 5159.795 kb on - strandat 5159.807 kb on - strandat 5159.887 kb on - strandat 5159.958 kb on + strandat 5159.959 kb on - strandat 5159.959 kb on - strandat 5159.959 kb on - strandat 5159.959 kb on - strandat 5159.996 kb on + strand, within PP_4543at 5160.282 kb on + strand, within PP_4543at 5160.282 kb on + strand, within PP_4543at 5160.283 kb on - strand, within PP_4543at 5160.283 kb on - strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.295 kb on - strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.580 kb on - strand, within PP_4543at 5160.580 kb on - strand, within PP_4543at 5160.685 kb on - strand, within PP_4543at 5160.738 kb on + strand, within PP_4543at 5160.738 kb on + strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strandat 5160.739 kb on - strand, within PP_4543at 5160.785 kb on + strand, within PP_4543at 5160.786 kb on - strand, within PP_4543at 5161.001 kb on + strandat 5161.002 kb on - strandat 5161.055 kb on + strandat 5161.055 kb on + strandat 5161.055 kb on + strandat 5161.056 kb on - strandat 5161.063 kb on + strandat 5161.063 kb on + strandat 5161.064 kb on - strandat 5161.068 kb on - strandat 5161.082 kb on + strandat 5161.082 kb on + strandat 5161.093 kb on + strandat 5161.093 kb on + strandat 5161.094 kb on - strandat 5161.094 kb on - strandat 5161.094 kb on - strandat 5161.117 kb on - strandat 5161.141 kb on + strandat 5161.152 kb on + strandat 5161.232 kb on + strandat 5161.232 kb on + strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.253 kb on + strandat 5161.261 kb on + strandat 5161.261 kb on + strandat 5161.368 kb on + strand, within PP_4544at 5161.509 kb on + strand, within PP_4544at 5161.570 kb on + strand, within PP_4544at 5161.571 kb on - strand, within PP_4544at 5161.590 kb on + strand, within PP_4544at 5161.591 kb on - strand, within PP_4544at 5161.591 kb on - strand, within PP_4544at 5161.591 kb on - strandat 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.896 kb on + strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.935 kb on + strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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5,159,015 + PP_4542 0.61 -0.3
5,159,037 + PP_4542 0.62 +0.1
5,159,037 + PP_4542 0.62 +1.5
5,159,037 + PP_4542 0.62 -0.9
5,159,038 - PP_4542 0.62 -2.9
5,159,038 - PP_4542 0.62 -0.6
5,159,038 - PP_4542 0.62 -0.6
5,159,038 - PP_4542 0.62 -1.1
5,159,038 - PP_4542 0.62 -1.9
5,159,038 - PP_4542 0.62 +0.7
5,159,038 - PP_4542 0.62 -3.2
5,159,038 - PP_4542 0.62 -1.9
5,159,138 + PP_4542 0.67 -2.1
5,159,138 + PP_4542 0.67 -0.4
5,159,138 + PP_4542 0.67 +1.5
5,159,236 + PP_4542 0.73 +1.0
5,159,237 - PP_4542 0.73 -0.7
5,159,276 + PP_4542 0.75 -1.9
5,159,687 + +2.1
5,159,687 + -3.2
5,159,688 - +0.2
5,159,688 - -0.9
5,159,774 - +0.3
5,159,794 + -0.6
5,159,795 - -0.8
5,159,795 - +0.6
5,159,807 - +1.6
5,159,887 - -1.0
5,159,958 + -2.5
5,159,959 - -2.0
5,159,959 - -0.2
5,159,959 - -0.4
5,159,959 - +1.7
5,159,996 + PP_4543 0.13 -0.4
5,160,282 + PP_4543 0.36 -2.9
5,160,282 + PP_4543 0.36 +0.6
5,160,283 - PP_4543 0.36 -1.0
5,160,283 - PP_4543 0.36 -3.1
5,160,294 + PP_4543 0.37 -0.6
5,160,294 + PP_4543 0.37 +1.4
5,160,294 + PP_4543 0.37 -2.4
5,160,294 + PP_4543 0.37 +0.9
5,160,295 - PP_4543 0.37 -1.8
5,160,299 + PP_4543 0.38 -0.2
5,160,299 + PP_4543 0.38 -0.1
5,160,299 + PP_4543 0.38 -1.1
5,160,299 + PP_4543 0.38 -0.4
5,160,299 + PP_4543 0.38 +0.4
5,160,299 + PP_4543 0.38 +0.4
5,160,299 + PP_4543 0.38 -1.1
5,160,299 + PP_4543 0.38 +0.0
5,160,300 - PP_4543 0.38 -0.9
5,160,300 - PP_4543 0.38 -0.8
5,160,300 - PP_4543 0.38 -0.2
5,160,300 - PP_4543 0.38 -0.4
5,160,300 - PP_4543 0.38 -2.0
5,160,300 - PP_4543 0.38 +0.2
5,160,300 - PP_4543 0.38 -1.0
5,160,300 - PP_4543 0.38 -0.4
5,160,300 - PP_4543 0.38 -0.0
5,160,580 - PP_4543 0.61 -0.3
5,160,580 - PP_4543 0.61 -1.8
5,160,685 - PP_4543 0.69 +1.7
5,160,738 + PP_4543 0.74 +1.0
5,160,738 + PP_4543 0.74 -2.9
5,160,739 - PP_4543 0.74 -0.7
5,160,739 - PP_4543 0.74 -4.2
5,160,739 - PP_4543 0.74 -0.4
5,160,739 - +1.2
5,160,739 - PP_4543 0.74 -2.1
5,160,785 + PP_4543 0.78 -0.2
5,160,786 - PP_4543 0.78 +0.3
5,161,001 + -0.4
5,161,002 - -0.3
5,161,055 + -1.1
5,161,055 + +1.1
5,161,055 + +0.2
5,161,056 - +0.1
5,161,063 + +0.8
5,161,063 + +1.1
5,161,064 - -0.1
5,161,068 - -1.6
5,161,082 + -0.0
5,161,082 + -0.2
5,161,093 + +0.8
5,161,093 + -1.3
5,161,094 - +0.8
5,161,094 - +0.0
5,161,094 - +0.6
5,161,117 - -0.2
5,161,141 + -3.6
5,161,152 + -2.7
5,161,232 + -2.1
5,161,232 + +0.3
5,161,233 - +0.0
5,161,233 - +0.8
5,161,233 - -0.8
5,161,233 - -4.1
5,161,233 - -0.4
5,161,253 + +0.2
5,161,261 + +0.1
5,161,261 + -0.1
5,161,368 + PP_4544 0.11 +1.1
5,161,509 + PP_4544 0.22 -0.3
5,161,570 + PP_4544 0.27 +1.0
5,161,571 - PP_4544 0.27 -2.5
5,161,590 + PP_4544 0.29 -0.6
5,161,591 - PP_4544 0.29 -0.6
5,161,591 - PP_4544 0.29 -2.5
5,161,591 - +0.6
5,161,683 + PP_4544 0.36 +0.2
5,161,683 + PP_4544 0.36 +3.0
5,161,683 + PP_4544 0.36 -0.5
5,161,684 - PP_4544 0.36 +1.5
5,161,684 - PP_4544 0.36 -4.4
5,161,684 - PP_4544 0.36 -1.7
5,161,719 + PP_4544 0.39 -0.4
5,161,719 + PP_4544 0.39 +0.1
5,161,848 + PP_4544 0.49 -0.5
5,161,848 + PP_4544 0.49 -2.4
5,161,848 + PP_4544 0.49 +0.9
5,161,848 + PP_4544 0.49 -2.7
5,161,849 - PP_4544 0.49 -0.1
5,161,849 - PP_4544 0.49 -0.7
5,161,849 - PP_4544 0.49 +1.4
5,161,896 + PP_4544 0.53 +1.0
5,161,897 - PP_4544 0.53 +0.8
5,161,897 - PP_4544 0.53 -2.5
5,161,935 + PP_4544 0.56 +1.2
5,161,936 - PP_4544 0.56 +0.5
5,161,936 - PP_4544 0.56 -0.8
5,161,957 - PP_4544 0.58 +0.2
5,161,957 - PP_4544 0.58 -0.8
5,162,025 + PP_4544 0.64 -0.8
5,162,025 + PP_4544 0.64 -0.9
5,162,025 + PP_4544 0.64 +2.2
5,162,025 + PP_4544 0.64 +0.5
5,162,025 + PP_4544 0.64 -1.1
5,162,025 + PP_4544 0.64 -0.0
5,162,025 + PP_4544 0.64 -0.2
5,162,026 - PP_4544 0.64 -0.1
5,162,026 - PP_4544 0.64 +2.2
5,162,026 - PP_4544 0.64 -1.9
5,162,026 - PP_4544 0.64 -2.0
5,162,026 - PP_4544 0.64 -3.1
5,162,026 - PP_4544 0.64 +0.0
5,162,026 - PP_4544 0.64 -0.8
5,162,026 - PP_4544 0.64 -0.9
5,162,026 - PP_4544 0.64 +0.3

Or see this region's nucleotide sequence