Strain Fitness in Pseudomonas putida KT2440 around PP_4527

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,142,030	+		PP_4526	0.31	+2.7
5,142,031	-		PP_4526	0.31	-1.7
5,142,031	-		PP_4526	0.31	-0.5
5,142,069	+		PP_4526	0.34	-3.6
5,142,069	+		PP_4526	0.34	+0.7
5,142,165	-		PP_4526	0.43	+1.8
5,142,165	-		PP_4526	0.43	-0.7
5,142,171	+		PP_4526	0.43	+0.2
5,142,172	-				+1.2
5,142,172	-		PP_4526	0.43	-0.4
5,142,172	-		PP_4526	0.43	+0.3
5,142,172	-		PP_4526	0.43	+0.7
5,142,172	-		PP_4526	0.43	+1.3
5,142,299	+		PP_4526	0.54	+0.2
5,142,299	+		PP_4526	0.54	-0.8
5,142,300	-		PP_4526	0.54	-2.3
5,142,300	-		PP_4526	0.54	-0.1
5,142,300	-		PP_4526	0.54	-2.5
5,142,300	-		PP_4526	0.54	-1.0
5,142,300	-		PP_4526	0.54	-0.4
5,142,308	+		PP_4526	0.55	-0.8
5,142,308	+		PP_4526	0.55	-0.6
5,142,308	+		PP_4526	0.55	+1.4
5,142,320	+		PP_4526	0.56	-2.7
5,142,321	-		PP_4526	0.56	+0.7
5,142,713	+		PP_4526	0.89	-1.5
5,142,714	-		PP_4526	0.89	-0.4
5,142,864	-				-0.1
5,143,044	+		PP_4527	0.20	-2.7
5,143,045	-		PP_4527	0.20	-3.1
5,143,045	-		PP_4527	0.20	-1.7
5,143,074	+		PP_4527	0.23	-1.4
5,143,074	+		PP_4527	0.23	+0.5
5,143,109	+		PP_4527	0.27	-1.4
5,143,109	+		PP_4527	0.27	-0.4
5,143,109	+		PP_4527	0.27	-2.5
5,143,109	+		PP_4527	0.27	-2.9
5,143,109	+		PP_4527	0.27	-0.5
5,143,109	+		PP_4527	0.27	-0.2
5,143,110	-		PP_4527	0.27	-1.0
5,143,110	-		PP_4527	0.27	+0.0
5,143,110	-		PP_4527	0.27	-1.4
5,143,110	-		PP_4527	0.27	+0.1
5,143,206	+		PP_4527	0.38	+0.2
5,143,206	+		PP_4527	0.38	+0.2
5,143,206	+		PP_4527	0.38	-1.2
5,143,453	+		PP_4527	0.64	-0.8
5,143,454	-		PP_4527	0.64	+1.4
5,143,469	-		PP_4527	0.66	-0.3
5,143,471	-		PP_4527	0.66	+0.4
5,143,622	+		PP_4527	0.83	-0.2
5,143,623	-		PP_4527	0.83	-2.1
5,143,700	+				-0.1
5,143,739	+				+2.3
5,143,740	-				+0.1
5,143,740	-				+0.7
5,143,783	+				-0.1
5,143,806	+				-0.6
5,143,807	-				+2.2
5,143,812	+				-2.2
5,143,812	+				-1.9
5,143,812	+				-0.8
5,143,813	-				+0.8
5,143,813	-				-1.6
5,143,813	-				-0.0
5,143,813	-				+0.4
5,143,813	-				+1.0
5,143,813	-				-0.6
5,143,813	-				-0.2
5,143,879	+				-0.2
5,143,880	-				-1.1
5,143,880	-				-0.4
5,144,099	+		PP_4528	0.49	+0.4
5,144,271	+		PP_4528	0.88	-1.2
5,144,316	+				-0.2
5,144,389	+		PP_4529	0.11	+1.0
5,144,389	+		PP_4529	0.11	+1.0
5,144,390	-		PP_4529	0.11	-0.2
5,144,543	+		PP_4529	0.71	-1.6
5,144,544	-		PP_4529	0.72	-0.0
5,144,615	+				-2.9
5,144,615	+				-0.3
5,144,615	+				-3.7
5,144,615	+				+0.4
5,144,616	-				-2.2
5,144,616	-				+0.6
5,144,662	+		PP_4530	0.25	-0.2
5,144,662	+		PP_4530	0.25	+0.9
5,144,662	+		PP_4530	0.25	-0.3
5,144,662	+		PP_4530	0.25	-2.9
5,144,662	+		PP_4530	0.25	+0.6
5,144,662	+		PP_4530	0.25	-2.6
5,144,663	-		PP_4530	0.25	-1.1
5,144,663	-		PP_4530	0.25	-3.5
5,144,663	-		PP_4530	0.25	+1.1
5,144,663	-		PP_4530	0.25	-1.3
5,144,688	-		PP_4530	0.34	-2.7
5,144,701	+		PP_4530	0.39	-2.6
5,144,701	+		PP_4530	0.39	+0.1
5,144,701	+		PP_4530	0.39	-2.3
5,144,701	+		PP_4530	0.39	+0.8
5,144,702	-		PP_4530	0.39	-0.7
5,144,702	-		PP_4530	0.39	-1.1
5,144,702	-		PP_4530	0.39	-2.3
5,144,722	+		PP_4530	0.46	-2.8
5,144,723	-		PP_4530	0.47	+0.4
5,144,723	-		PP_4530	0.47	-3.8