Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4512 and PP_4513 are separated by 0 nucleotides PP_4513 and PP_4514 are separated by 67 nucleotides
PP_4512: PP_4512 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 5,125,208 to 5,126,098
_4512
PP_4513: PP_4513 - conserved protein of unknown function, at 5,126,099 to 5,126,380
_4513
PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634
_4514
Position (kb) 5126
5127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5125.107 kb on + strand at 5125.108 kb on - strand at 5125.108 kb on - strand at 5125.144 kb on + strand at 5125.144 kb on + strand at 5125.145 kb on - strand at 5125.184 kb on - strand at 5125.184 kb on - strand at 5125.483 kb on - strand, within PP_4512 at 5125.483 kb on - strand, within PP_4512 at 5125.558 kb on + strand, within PP_4512 at 5125.608 kb on + strand, within PP_4512 at 5125.609 kb on - strand, within PP_4512 at 5125.738 kb on - strand, within PP_4512 at 5125.946 kb on + strand, within PP_4512 at 5125.947 kb on - strand, within PP_4512 at 5125.951 kb on + strand, within PP_4512 at 5125.952 kb on - strand, within PP_4512 at 5126.162 kb on + strand, within PP_4513 at 5126.163 kb on - strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.346 kb on + strand, within PP_4513 at 5126.347 kb on - strand, within PP_4513 at 5126.347 kb on - strand, within PP_4513 at 5126.347 kb on - strand, within PP_4513 at 5126.398 kb on + strand at 5126.399 kb on - strand at 5126.410 kb on + strand at 5126.410 kb on + strand at 5126.411 kb on - strand at 5126.411 kb on - strand at 5126.411 kb on - strand at 5126.412 kb on + strand at 5126.412 kb on + strand at 5126.412 kb on + strand at 5126.413 kb on - strand at 5126.413 kb on - strand at 5126.413 kb on - strand at 5126.413 kb on - strand at 5126.415 kb on + strand at 5126.415 kb on + strand at 5126.426 kb on - strand at 5126.426 kb on - strand at 5126.484 kb on - strand at 5126.579 kb on - strand at 5126.658 kb on + strand at 5126.658 kb on + strand at 5126.659 kb on - strand at 5126.670 kb on + strand, within PP_4514 at 5126.671 kb on - strand, within PP_4514 at 5126.671 kb on - strand, within PP_4514 at 5127.005 kb on - strand, within PP_4514 at 5127.005 kb on - strand, within PP_4514 at 5127.178 kb on + strand, within PP_4514 at 5127.178 kb on + strand, within PP_4514 at 5127.178 kb on + strand, within PP_4514 at 5127.178 kb on + strand, within PP_4514 at 5127.178 kb on + strand, within PP_4514 at 5127.179 kb on - strand, within PP_4514 at 5127.179 kb on - strand, within PP_4514
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 5,125,107 + -0.5 5,125,108 - -1.0 5,125,108 - -0.4 5,125,144 + -1.7 5,125,144 + -0.4 5,125,145 - -0.7 5,125,184 - -2.8 5,125,184 - -0.5 5,125,483 - PP_4512 0.31 -0.8 5,125,483 - PP_4512 0.31 -2.0 5,125,558 + PP_4512 0.39 +0.2 5,125,608 + PP_4512 0.45 -0.5 5,125,609 - PP_4512 0.45 +0.5 5,125,738 - PP_4512 0.59 +0.3 5,125,946 + PP_4512 0.83 -1.7 5,125,947 - PP_4512 0.83 +0.6 5,125,951 + PP_4512 0.83 -0.2 5,125,952 - PP_4512 0.84 -2.9 5,126,162 + PP_4513 0.22 -1.6 5,126,163 - PP_4513 0.23 -1.5 5,126,346 + PP_4513 0.88 -1.6 5,126,346 + PP_4513 0.88 -1.0 5,126,346 + PP_4513 0.88 +0.3 5,126,346 + PP_4513 0.88 -2.1 5,126,346 + PP_4513 0.88 +0.0 5,126,346 + PP_4513 0.88 -0.5 5,126,347 - PP_4513 0.88 -0.2 5,126,347 - PP_4513 0.88 -0.7 5,126,347 - PP_4513 0.88 +1.0 5,126,398 + -2.5 5,126,399 - -0.6 5,126,410 + -1.7 5,126,410 + -1.7 5,126,411 - +0.3 5,126,411 - -2.1 5,126,411 - -2.9 5,126,412 + -2.6 5,126,412 + -2.0 5,126,412 + +0.7 5,126,413 - +0.9 5,126,413 - -2.5 5,126,413 - +1.1 5,126,413 - +1.1 5,126,415 + +0.5 5,126,415 + +0.5 5,126,426 - -2.8 5,126,426 - +1.6 5,126,484 - -2.9 5,126,579 - +0.5 5,126,658 + +0.4 5,126,658 + +0.1 5,126,659 - -0.0 5,126,670 + PP_4514 0.10 +0.8 5,126,671 - PP_4514 0.10 -1.4 5,126,671 - PP_4514 0.10 -0.6 5,127,005 - PP_4514 0.25 -1.0 5,127,005 - PP_4514 0.25 -0.1 5,127,178 + PP_4514 0.33 +1.0 5,127,178 + PP_4514 0.33 +0.6 5,127,178 + PP_4514 0.33 -3.0 5,127,178 + PP_4514 0.33 -2.8 5,127,178 + PP_4514 0.33 +1.1 5,127,179 - PP_4514 0.33 -1.4 5,127,179 - PP_4514 0.33 +1.3
Or see this region's nucleotide sequence