Strain Fitness in Pseudomonas putida KT2440 around PP_4466

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,069,028	+		PP_4465	0.80	+0.2
5,069,028	+		PP_4465	0.80	+1.5
5,069,043	+		PP_4465	0.81	+0.1
5,069,119	+		PP_4465	0.86	-3.5
5,069,119	+		PP_4465	0.86	+1.1
5,069,177	+				-1.5
5,069,177	+				-1.7
5,069,180	+				+1.6
5,069,181	-				-0.3
5,069,181	-				+0.9
5,069,208	+				+0.2
5,069,326	+				+1.0
5,069,427	+				+1.5
5,069,507	+				+1.0
5,069,544	-				+0.2
5,069,777	+				+2.0
5,069,800	-				+0.8
5,069,820	+				-0.7
5,069,884	-				+0.5
5,069,898	-				-2.7
5,070,003	+				-1.6
5,070,015	+				-1.0
5,070,016	-				+1.1
5,070,041	-				-2.4
5,070,056	-				+3.0
5,070,115	+		PP_4466	0.12	-0.1
5,070,115	+		PP_4466	0.12	-0.5
5,070,185	+		PP_4466	0.20	-0.0
5,070,197	-		PP_4466	0.21	-2.2
5,070,209	-		PP_4466	0.22	+1.7
5,070,209	-		PP_4466	0.22	+1.4
5,070,218	+		PP_4466	0.23	+0.8
5,070,219	-		PP_4466	0.23	-0.4
5,070,242	+		PP_4466	0.26	-0.7
5,070,243	-		PP_4466	0.26	+0.8
5,070,243	-		PP_4466	0.26	+0.4
5,070,243	-		PP_4466	0.26	+1.7
5,070,243	-		PP_4466	0.26	+0.5
5,070,243	-		PP_4466	0.26	-0.3
5,070,262	-		PP_4466	0.28	+1.7
5,070,291	-		PP_4466	0.32	+1.4
5,070,291	-		PP_4466	0.32	+0.6
5,070,343	+		PP_4466	0.38	+0.1
5,070,344	-		PP_4466	0.38	+0.8
5,070,344	-		PP_4466	0.38	+0.1
5,070,384	+		PP_4466	0.42	+0.3
5,070,385	-		PP_4466	0.42	+2.9
5,070,385	-		PP_4466	0.42	+0.3
5,070,429	-		PP_4466	0.48	+0.4
5,070,433	-		PP_4466	0.48	-0.1
5,070,433	-		PP_4466	0.48	-0.0
5,070,433	-		PP_4466	0.48	-0.2
5,070,450	+		PP_4466	0.50	-1.0
5,070,459	+		PP_4466	0.51	+0.8
5,070,459	+		PP_4466	0.51	+0.1
5,070,460	-		PP_4466	0.51	-0.4
5,070,474	+		PP_4466	0.53	+0.8
5,070,474	+		PP_4466	0.53	+0.9
5,070,474	+		PP_4466	0.53	+1.1
5,070,475	-		PP_4466	0.53	-1.4
5,070,475	-		PP_4466	0.53	+0.7
5,070,540	+		PP_4466	0.60	-0.6
5,070,541	-		PP_4466	0.60	+0.5
5,070,607	+		PP_4466	0.68	+1.4
5,070,607	+		PP_4466	0.68	+1.1
5,070,607	+		PP_4466	0.68	+0.4
5,070,610	+		PP_4466	0.68	+0.3
5,070,610	+		PP_4466	0.68	-0.0
5,070,610	+		PP_4466	0.68	+1.7
5,070,611	-		PP_4466	0.68	-0.6
5,070,616	+		PP_4466	0.69	+1.7
5,070,616	+		PP_4466	0.69	+0.4
5,070,617	-		PP_4466	0.69	-2.9
5,070,622	+		PP_4466	0.70	+0.5
5,070,679	+		PP_4466	0.76	-0.5
5,070,679	+		PP_4466	0.76	-0.5
5,070,680	-		PP_4466	0.76	+1.1
5,070,680	-		PP_4466	0.76	+1.4
5,070,680	-		PP_4466	0.76	-3.1
5,070,727	+		PP_4466	0.82	+1.3
5,070,733	-		PP_4466	0.82	+1.1
5,070,750	-		PP_4466	0.84	+0.3
5,070,759	+		PP_4466	0.85	-0.2
5,070,780	-		PP_4466	0.88	+1.5
5,070,804	+				-2.5
5,070,805	-				-0.3
5,070,825	-				+0.9
5,070,825	-				-1.4
5,070,926	+				+1.0
5,070,927	-				+1.2
5,070,931	+				-0.5
5,070,931	+				-1.4
5,070,931	+				+0.7
5,070,932	-				+0.7
5,070,932	-				-1.1
5,070,932	-				+1.6
5,070,932	-				+0.8
5,070,975	+				-2.1
5,070,975	+				+1.4
5,071,029	-				+0.2
5,071,052	-				-0.8
5,071,062	+				+0.4
5,071,116	+				+0.4
5,071,116	+				-0.1
5,071,117	-				+0.0
5,071,139	+				-2.2
5,071,139	+				+0.5
5,071,160	+				+0.7
5,071,271	+		PP_4467	0.15	+0.2
5,071,335	+		PP_4467	0.22	-1.6
5,071,335	+		PP_4467	0.22	+2.1
5,071,335	+		PP_4467	0.22	-0.6
5,071,335	+		PP_4467	0.22	+0.5
5,071,335	+		PP_4467	0.22	+0.7
5,071,335	+		PP_4467	0.22	+0.1
5,071,336	-		PP_4467	0.23	+0.9
5,071,336	-		PP_4467	0.23	+1.8
5,071,393	-		PP_4467	0.29	+0.9
5,071,393	-		PP_4467	0.29	+1.1
5,071,393	-		PP_4467	0.29	+0.7
5,071,393	-		PP_4467	0.29	-0.2
5,071,393	-		PP_4467	0.29	+0.3
5,071,414	-		PP_4467	0.31	+1.3
5,071,414	-		PP_4467	0.31	+0.9
5,071,419	+		PP_4467	0.32	+0.7
5,071,500	+		PP_4467	0.41	-1.2
5,071,501	-		PP_4467	0.41	-1.7
5,071,521	-		PP_4467	0.43	+0.2
5,071,521	-		PP_4467	0.43	+0.8
5,071,521	-		PP_4467	0.43	+0.3
5,071,524	+		PP_4467	0.43	+0.9
5,071,524	+		PP_4467	0.43	+1.7