Strain Fitness in Pseudomonas putida KT2440 around PP_4458

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,058,294	+		PP_4457	0.15	+1.3
5,058,294	+		PP_4457	0.15	+2.4
5,058,295	-		PP_4457	0.15	+0.4
5,058,295	-		PP_4457	0.15	+0.9
5,058,295	-		PP_4457	0.15	-2.7
5,058,347	+		PP_4457	0.20	+1.0
5,058,348	-				+2.1
5,058,348	-		PP_4457	0.20	-0.3
5,058,389	-		PP_4457	0.23	+0.1
5,058,389	-		PP_4457	0.23	-2.9
5,058,395	-		PP_4457	0.24	+3.4
5,058,437	+		PP_4457	0.28	+0.2
5,058,437	+		PP_4457	0.28	+0.8
5,058,437	+		PP_4457	0.28	+0.6
5,058,438	-		PP_4457	0.28	+1.8
5,058,533	-		PP_4457	0.36	+1.1
5,058,605	+		PP_4457	0.43	-0.5
5,058,606	-		PP_4457	0.43	+1.1
5,058,606	-		PP_4457	0.43	-0.2
5,058,681	-		PP_4457	0.49	+1.3
5,058,689	+		PP_4457	0.50	+0.5
5,058,689	+		PP_4457	0.50	+1.6
5,058,689	+		PP_4457	0.50	-1.2
5,058,689	+		PP_4457	0.50	+0.6
5,058,690	-		PP_4457	0.50	+0.9
5,058,690	-		PP_4457	0.50	+2.2
5,058,690	-		PP_4457	0.50	-1.2
5,058,690	-		PP_4457	0.50	+1.0
5,058,690	-		PP_4457	0.50	-0.0
5,058,690	-		PP_4457	0.50	+1.1
5,058,690	-		PP_4457	0.50	+1.1
5,058,866	+		PP_4457	0.66	-0.5
5,058,866	+		PP_4457	0.66	-0.2
5,058,866	+		PP_4457	0.66	-1.2
5,058,866	+		PP_4457	0.66	-0.8
5,058,866	+		PP_4457	0.66	-0.7
5,058,866	+		PP_4457	0.66	+0.4
5,058,867	-		PP_4457	0.66	+2.0
5,058,984	+		PP_4457	0.76	-1.6
5,059,043	-		PP_4457	0.81	+0.5
5,059,068	+		PP_4457	0.84	+0.6
5,059,068	+		PP_4457	0.84	+0.8
5,059,068	+		PP_4457	0.84	-0.8
5,059,068	+		PP_4457	0.84	+0.1
5,059,069	-		PP_4457	0.84	+0.6
5,059,069	-		PP_4457	0.84	+0.9
5,059,069	-		PP_4457	0.84	+1.6
5,059,072	+		PP_4457	0.84	+0.5
5,059,073	-		PP_4457	0.84	+0.7
5,059,073	-		PP_4457	0.84	+1.9
5,059,117	+		PP_4457	0.88	+0.9
5,059,117	+		PP_4457	0.88	+1.2
5,059,117	+		PP_4457	0.88	+1.3
5,059,118	-		PP_4457	0.88	+1.0
5,059,135	-		PP_4457	0.90	+1.1
5,059,174	+				+1.0
5,059,175	-				-2.6
5,059,227	-				+0.1
5,059,254	+				+0.2
5,059,254	+				+1.1
5,059,254	+				+1.0
5,059,255	-				-0.6
5,059,255	-				+0.1
5,059,276	+				+1.1
5,059,326	+				+1.1
5,059,326	+				-0.4
5,059,326	+				+1.4
5,059,326	+				+2.7
5,059,327	-				-0.7
5,059,327	-				+1.1
5,059,327	-				-0.9
5,059,327	-				+0.2
5,059,327	-				+1.3
5,059,327	-				+0.3
5,059,327	-				-0.2
5,059,332	+				+0.5
5,059,332	+				+0.1
5,059,332	+				+1.8
5,059,332	+				+0.7
5,059,333	-				+0.4
5,059,333	-				-0.1
5,059,352	-				+1.4
5,059,391	+				+1.8
5,059,392	-				+0.5
5,059,392	-				+1.1
5,059,392	-				+0.1
5,059,392	-				-0.0
5,059,392	-				-0.4
5,059,487	+		PP_4458	0.15	-1.0
5,059,548	+		PP_4458	0.19	-1.4
5,059,596	+		PP_4458	0.22	+1.5
5,059,597	-		PP_4458	0.22	+0.5
5,059,597	-		PP_4458	0.22	+1.4
5,059,638	+		PP_4458	0.24	+0.8
5,059,639	-		PP_4458	0.24	+2.3
5,059,639	-		PP_4458	0.24	+1.5
5,059,675	+		PP_4458	0.27	+0.7
5,059,675	+		PP_4458	0.27	+0.0
5,059,675	+		PP_4458	0.27	+1.6
5,059,702	+		PP_4458	0.28	+0.3
5,059,702	+		PP_4458	0.28	-0.2
5,059,812	+		PP_4458	0.35	+0.6
5,059,812	+		PP_4458	0.35	+0.6
5,059,813	-		PP_4458	0.35	+0.7
5,059,818	+		PP_4458	0.36	-0.6
5,059,818	+		PP_4458	0.36	+1.4
5,059,818	+		PP_4458	0.36	+1.5
5,059,819	-		PP_4458	0.36	-3.5
5,059,819	-		PP_4458	0.36	+0.6
5,059,859	+		PP_4458	0.38	-0.4
5,059,860	-		PP_4458	0.38	-0.1
5,059,860	-		PP_4458	0.38	+1.6
5,059,860	-		PP_4458	0.38	+1.6
5,059,860	-		PP_4458	0.38	+0.6
5,059,884	-		PP_4458	0.40	+1.7
5,059,884	-		PP_4458	0.40	-1.4
5,059,993	+		PP_4458	0.47	+0.5
5,060,142	+		PP_4458	0.56	+1.3
5,060,142	+		PP_4458	0.56	+0.3
5,060,143	-		PP_4458	0.56	+0.8
5,060,178	+		PP_4458	0.59	-0.2
5,060,205	+		PP_4458	0.60	-0.6
5,060,205	+		PP_4458	0.60	-0.8
5,060,205	+		PP_4458	0.60	+0.4
5,060,265	+		PP_4458	0.64	+0.9
5,060,296	+		PP_4458	0.66	+2.7
5,060,296	+		PP_4458	0.66	+1.7
5,060,297	-		PP_4458	0.66	+1.0
5,060,319	+		PP_4458	0.67	+0.8
5,060,347	+		PP_4458	0.69	-0.3
5,060,348	-		PP_4458	0.69	+1.1
5,060,348	-		PP_4458	0.69	+0.5
5,060,355	+		PP_4458	0.70	+1.7
5,060,355	+		PP_4458	0.70	+1.3
5,060,356	-		PP_4458	0.70	+0.7
5,060,356	-		PP_4458	0.70	+1.4
5,060,367	-		PP_4458	0.70	+0.6
5,060,380	-		PP_4458	0.71	+1.0
5,060,380	-		PP_4458	0.71	-0.1
5,060,413	+		PP_4458	0.73	+1.4
5,060,413	+		PP_4458	0.73	+1.2
5,060,413	+		PP_4458	0.73	+0.7
5,060,466	+		PP_4458	0.77	+0.2
5,060,467	-		PP_4458	0.77	+0.1
5,060,496	+		PP_4458	0.79	-0.4
5,060,497	-		PP_4458	0.79	-0.4
5,060,659	+		PP_4458	0.89	+0.4
5,060,659	+		PP_4458	0.89	+1.5
5,060,659	+		PP_4458	0.89	+1.2
5,060,660	-		PP_4458	0.89	+0.3
5,060,660	-		PP_4458	0.89	-0.5
5,060,701	+				+0.7
5,060,701	+				+1.6
5,060,702	-				+0.2
5,060,702	-				+1.3
5,060,720	-				+0.9
5,060,744	-				+0.6
5,060,783	+				+1.8
5,060,783	+				-0.2
5,060,783	+				-2.8
5,060,783	+				-0.2
5,060,784	-				+1.6
5,060,784	-				-0.2
5,060,786	+				+1.2
5,060,786	+				-0.5
5,060,787	-				+0.4
5,060,787	-				+1.5
5,060,787	-				+0.9
5,060,795	+				-0.5
5,060,795	+				+0.6
5,060,796	-				+2.2
5,060,822	+				+2.4
5,060,822	+				+1.1
5,060,822	+				+2.4
5,060,823	-				+0.8
5,060,852	+				+0.2
5,060,852	+				+0.3
5,060,853	-				-2.4
5,061,076	+				+0.5
5,061,076	+				+0.7
5,061,077	-				+0.2
5,061,081	+				+0.9
5,061,082	-				+0.6
5,061,082	-				-3.8
5,061,096	+				+0.9
5,061,123	+				-0.7
5,061,123	+				+3.1
5,061,124	-				+0.5
5,061,124	-				+1.2
5,061,128	-				-0.5
5,061,128	-				+0.1
5,061,146	-				+0.6
5,061,159	+				+1.2
5,061,159	+				+1.6
5,061,160	-				+0.7
5,061,160	-				-2.5
5,061,160	-				-0.6
5,061,164	+				+0.1
5,061,164	+				+1.4
5,061,212	+				+1.4
5,061,212	+				+1.1
5,061,213	-				+1.4
5,061,250	+				-0.9
5,061,250	+				+0.8
5,061,250	+				+0.5
5,061,250	+				+1.7
5,061,250	+				-0.6
5,061,251	-				+2.1
5,061,251	-				+1.8
5,061,270	-				+0.9
5,061,273	+				+0.8
5,061,274	-				+2.2
5,061,288	-				+0.6
5,061,427	+				+0.7
5,061,427	+				+0.6
5,061,427	+				-1.7
5,061,428	-				+0.1
5,061,428	-				-0.2
5,061,428	-				+0.0
5,061,459	-		PP_4459	0.12	+1.3
5,061,547	+		PP_4459	0.20	-0.4
5,061,548	-		PP_4459	0.20	+0.9
5,061,657	-		PP_4459	0.30	+0.3
5,061,802	-		PP_4459	0.44	+0.2
5,061,802	-		PP_4459	0.44	+1.0