Strain Fitness in Pseudomonas putida KT2440 around PP_4453

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,051,848	-		PP_4452	0.38	+2.4
5,051,849	+		PP_4452	0.38	+0.7
5,051,856	-		PP_4452	0.39	+0.1
5,052,069	+		PP_4452	0.59	+1.0
5,052,200	-		PP_4452	0.71	-0.2
5,052,200	-		PP_4452	0.71	-0.4
5,052,284	-		PP_4452	0.79	+0.3
5,052,328	-		PP_4452	0.83	+2.2
5,052,456	-				+2.7
5,052,486	+				+1.4
5,052,490	+				+1.9
5,052,490	+				-0.3
5,052,491	-				+0.8
5,052,497	+				+0.1
5,052,498	-				+1.5
5,052,770	+				+1.2
5,052,774	+				+0.0
5,052,798	-				+1.4
5,052,798	-				+0.8
5,052,798	-				-0.8
5,052,799	+				+0.6
5,052,799	+				+1.1
5,052,799	+				+0.8
5,052,810	-		PP_4453	0.10	+2.2
5,052,819	-		PP_4453	0.11	+3.0
5,052,862	+		PP_4453	0.13	-0.5
5,052,863	-		PP_4453	0.13	-0.3
5,052,897	+		PP_4453	0.15	-1.3
5,052,921	+		PP_4453	0.17	+1.1
5,052,921	+		PP_4453	0.17	-0.9
5,052,921	+		PP_4453	0.17	-0.1
5,052,987	+		PP_4453	0.20	+1.5
5,052,987	+		PP_4453	0.20	+1.8
5,052,988	-		PP_4453	0.20	+1.4
5,052,988	-		PP_4453	0.20	+2.6
5,053,132	-		PP_4453	0.28	-1.1
5,053,175	-		PP_4453	0.30	+1.1
5,053,216	-		PP_4453	0.33	-0.2
5,053,295	+		PP_4453	0.37	-0.1
5,053,295	+		PP_4453	0.37	+1.6
5,053,303	-		PP_4453	0.37	+0.8
5,053,303	-		PP_4453	0.37	+1.3
5,053,303	-		PP_4453	0.37	+0.6
5,053,303	-		PP_4453	0.37	-1.3
5,053,303	-		PP_4453	0.37	+0.0
5,053,541	+		PP_4453	0.50	+1.3
5,053,600	+		PP_4453	0.54	+0.8
5,053,600	+		PP_4453	0.54	-2.1
5,053,600	+		PP_4453	0.54	+0.1
5,053,601	-		PP_4453	0.54	+0.4
5,053,601	-		PP_4453	0.54	-0.3
5,053,601	-		PP_4453	0.54	+0.7
5,053,601	-		PP_4453	0.54	-1.1
5,053,616	+		PP_4453	0.54	+1.4
5,053,676	+		PP_4453	0.58	+1.5
5,053,677	-		PP_4453	0.58	+0.4
5,053,678	+		PP_4453	0.58	+0.8
5,053,741	+		PP_4453	0.61	+2.1
5,053,741	+		PP_4453	0.61	+0.4
5,053,741	+		PP_4453	0.61	+1.3
5,053,741	+		PP_4453	0.61	+1.3
5,053,754	+		PP_4453	0.62	+0.7
5,053,754	+		PP_4453	0.62	+1.5
5,053,754	+		PP_4453	0.62	-0.3
5,053,754	+		PP_4453	0.62	+1.5
5,053,754	+		PP_4453	0.62	+1.0
5,053,755	-		PP_4453	0.62	-0.1
5,053,764	+		PP_4453	0.63	+1.6
5,053,765	-				+1.1
5,053,784	+		PP_4453	0.64	-0.7
5,053,784	+		PP_4453	0.64	+0.1
5,053,784	+		PP_4453	0.64	+0.7
5,053,975	+		PP_4453	0.74	+0.2
5,053,976	-		PP_4453	0.74	+1.4
5,053,985	-		PP_4453	0.75	+1.9
5,054,071	-		PP_4453	0.79	+0.0
5,054,196	+		PP_4453	0.86	+1.1
5,054,197	-		PP_4453	0.86	-1.3
5,054,197	-		PP_4453	0.86	+1.0
5,054,197	-		PP_4453	0.86	+1.0
5,054,243	+		PP_4453	0.89	+2.5
5,054,243	+		PP_4453	0.89	-1.5
5,054,244	-		PP_4453	0.89	-0.9
5,054,244	-		PP_4453	0.89	+0.0
5,054,244	-		PP_4453	0.89	+0.5
5,054,246	+		PP_4453	0.89	+0.3
5,054,246	+		PP_4453	0.89	+1.0
5,054,246	+		PP_4453	0.89	+1.1
5,054,246	+		PP_4453	0.89	+0.3
5,054,247	-		PP_4453	0.89	+0.4
5,054,247	-		PP_4453	0.89	+0.1
5,054,397	-				+0.4
5,054,397	-				+2.0
5,054,451	-				+0.8
5,054,451	-				-0.0
5,054,451	-				+0.1
5,054,451	-				+0.4
5,054,484	-				+1.1
5,054,507	+				-0.2
5,054,507	+				+0.3
5,054,507	+				-3.1
5,054,507	+				+1.6
5,054,507	+				+0.7
5,054,508	-				-0.2
5,054,508	-				-0.8
5,054,508	-				+0.8
5,054,508	-				+0.8
5,054,508	-				+2.8
5,054,508	-				+2.1
5,054,508	-				+1.0
5,054,513	+				+0.5
5,054,513	+				+1.8
5,054,514	-				+1.6
5,054,514	-				+1.3
5,054,514	-				+0.7
5,054,539	+				+1.0
5,054,573	+				+0.6
5,054,765	+		PP_4454	0.29	+0.6
5,054,766	-		PP_4454	0.29	+0.7
5,054,766	-		PP_4454	0.29	+0.2
5,054,798	-		PP_4454	0.32	-0.5
5,054,798	-		PP_4454	0.32	+2.0
5,054,798	-		PP_4454	0.32	+0.0
5,054,798	-		PP_4454	0.32	-1.1
5,054,826	+		PP_4454	0.36	+0.6
5,054,873	+		PP_4454	0.41	+1.1
5,054,873	+		PP_4454	0.41	+0.1
5,054,873	+		PP_4454	0.41	-0.3
5,054,873	+		PP_4454	0.41	+0.9
5,054,873	+		PP_4454	0.41	-1.9
5,054,873	+		PP_4454	0.41	+1.4
5,054,873	+		PP_4454	0.41	+0.1
5,054,873	+		PP_4454	0.41	-0.1
5,054,874	-		PP_4454	0.41	-0.6
5,054,874	-		PP_4454	0.41	-0.8
5,054,874	-		PP_4454	0.41	-1.0
5,054,874	-		PP_4454	0.41	+1.6
5,054,894	-		PP_4454	0.43	-1.3
5,055,041	+		PP_4454	0.60	+1.0
5,055,041	+		PP_4454	0.60	-0.0
5,055,041	+		PP_4454	0.60	+0.0
5,055,041	+		PP_4454	0.60	-2.1
5,055,055	-		PP_4454	0.62	-2.3
5,055,171	+		PP_4454	0.75	+1.3
5,055,171	+		PP_4454	0.75	+3.6
5,055,171	+		PP_4454	0.75	+0.5
5,055,171	+		PP_4454	0.75	-0.3
5,055,171	+		PP_4454	0.75	-0.8
5,055,172	-		PP_4454	0.75	+1.1
5,055,172	-		PP_4454	0.75	-1.5
5,055,218	-		PP_4454	0.80	-0.2
5,055,219	+		PP_4454	0.81	+0.7
5,055,246	+		PP_4454	0.84	+0.8
5,055,247	-		PP_4454	0.84	+0.3
5,055,362	+				+1.8
5,055,382	+				+0.4
5,055,382	+				-0.1
5,055,420	-				+1.4
5,055,442	+				-0.1
5,055,442	+				+0.3
5,055,443	-				+0.7