Strain Fitness in Pseudomonas putida KT2440 around PP_4452

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,050,516	-		PP_5687	0.16	+2.5
5,050,533	+		PP_5687	0.18	+1.7
5,050,696	-		PP_5687	0.43	-0.3
5,050,785	+		PP_5687	0.57	+1.5
5,050,786	-		PP_5687	0.57	+1.6
5,050,786	-		PP_5687	0.57	+1.2
5,050,840	+		PP_5687	0.66	+0.4
5,050,840	+		PP_5687	0.66	+0.1
5,050,938	+		PP_5687	0.81	+0.4
5,050,973	-		PP_5687	0.86	+0.4
5,050,986	+		PP_5687	0.88	+0.2
5,051,034	+				-0.0
5,051,066	-				-0.8
5,051,160	+				+0.9
5,051,170	+				+0.6
5,051,304	-				+1.5
5,051,305	+				+1.0
5,051,365	+				+1.8
5,051,419	-				-0.2
5,051,470	-				+2.5
5,051,470	-				-0.2
5,051,556	+		PP_4452	0.11	+1.4
5,051,578	+		PP_4452	0.13	+1.1
5,051,578	+		PP_4452	0.13	+1.4
5,051,848	-		PP_4452	0.38	+2.4
5,051,849	+		PP_4452	0.38	+0.7
5,051,856	-		PP_4452	0.39	+0.1
5,052,069	+		PP_4452	0.59	+1.0
5,052,200	-		PP_4452	0.71	-0.2
5,052,200	-		PP_4452	0.71	-0.4
5,052,284	-		PP_4452	0.79	+0.3
5,052,328	-		PP_4452	0.83	+2.2
5,052,456	-				+2.7
5,052,486	+				+1.4
5,052,490	+				+1.9
5,052,490	+				-0.3
5,052,491	-				+0.8
5,052,497	+				+0.1
5,052,498	-				+1.5
5,052,770	+				+1.2
5,052,774	+				+0.0
5,052,798	-				+1.4
5,052,798	-				+0.8
5,052,798	-				-0.8
5,052,799	+				+0.6
5,052,799	+				+1.1
5,052,799	+				+0.8
5,052,810	-		PP_4453	0.10	+2.2
5,052,819	-		PP_4453	0.11	+3.0
5,052,862	+		PP_4453	0.13	-0.5
5,052,863	-		PP_4453	0.13	-0.3
5,052,897	+		PP_4453	0.15	-1.3
5,052,921	+		PP_4453	0.17	+1.1
5,052,921	+		PP_4453	0.17	-0.9
5,052,921	+		PP_4453	0.17	-0.1
5,052,987	+		PP_4453	0.20	+1.5
5,052,987	+		PP_4453	0.20	+1.8
5,052,988	-		PP_4453	0.20	+1.4
5,052,988	-		PP_4453	0.20	+2.6
5,053,132	-		PP_4453	0.28	-1.1
5,053,175	-		PP_4453	0.30	+1.1
5,053,216	-		PP_4453	0.33	-0.2
5,053,295	+		PP_4453	0.37	-0.1
5,053,295	+		PP_4453	0.37	+1.6
5,053,303	-		PP_4453	0.37	+0.8
5,053,303	-		PP_4453	0.37	+1.3
5,053,303	-		PP_4453	0.37	+0.6
5,053,303	-		PP_4453	0.37	-1.3
5,053,303	-		PP_4453	0.37	+0.0