Strain Fitness in Pseudomonas putida KT2440 around PP_4447

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,040,758	+		PP_5680	0.34	+1.1
5,040,759	-		PP_5680	0.34	-0.4
5,040,759	-		PP_5680	0.34	-1.1
5,040,759	-		PP_5680	0.34	-0.1
5,040,759	-		PP_5680	0.34	+0.6
5,040,766	+		PP_5680	0.36	+1.1
5,040,766	+		PP_5680	0.36	-1.0
5,040,766	+		PP_5680	0.36	+0.6
5,040,767	-		PP_5680	0.36	+1.2
5,040,767	-		PP_5680	0.36	-0.5
5,040,767	-		PP_5680	0.36	+0.2
5,040,767	-		PP_5680	0.36	+1.2
5,040,767	-		PP_5680	0.36	+1.3
5,040,944	+		PP_5680	0.80	+2.8
5,040,944	+				+2.7
5,040,945	-		PP_5680	0.80	-1.5
5,040,991	+				+1.5
5,041,001	+				-0.3
5,041,002	-				+1.3
5,041,002	-				-0.6
5,041,010	+				+1.8
5,041,030	+				+0.8
5,041,097	-				+0.8
5,041,123	+				+2.3
5,041,135	+				+1.0
5,041,135	+				+0.8
5,041,135	+				-0.7
5,041,142	+				+0.5
5,041,143	-				+0.9
5,041,143	-				+0.7
5,041,143	-				+1.5
5,041,153	+				+1.9
5,041,153	+				-0.1
5,041,153	+				+0.1
5,041,153	+				+2.5
5,041,154	-				+0.6
5,041,201	-				+0.6
5,041,250	+				-0.7
5,041,372	-				-1.3
5,041,446	-				+1.4
5,041,446	-				+1.9
5,041,449	+				+1.0
5,041,455	+				+1.4
5,041,455	+				-0.4
5,041,456	-				+1.7
5,041,556	+				+0.2
5,041,556	+				+1.1
5,041,556	+				+0.9
5,041,557	-				+1.4
5,041,557	-				-0.9
5,041,557	-				-1.5
5,041,557	-				+0.6
5,041,560	+				-0.4
5,041,560	+				+1.2
5,041,560	+				-1.3
5,041,560	+				+0.3
5,041,560	+				+0.7
5,041,561	-				+0.1
5,041,561	-				+1.8
5,041,561	-				+1.1
5,041,596	-				-0.4
5,041,604	+				+1.2
5,041,612	+				+0.3
5,041,708	-				+1.6
5,041,720	+				+1.2
5,041,721	-				+3.2
5,041,727	-				+1.2
5,041,757	+				+0.3
5,041,785	-				+1.1
5,041,837	+		PP_4447	0.12	+2.6
5,041,837	+		PP_4447	0.12	+0.5
5,041,853	-		PP_4447	0.14	+0.5
5,041,870	+		PP_4447	0.15	+1.2
5,041,976	-		PP_4447	0.23	+1.0
5,042,016	-		PP_4447	0.27	+0.7
5,042,141	+		PP_4447	0.37	-2.6
5,042,148	-		PP_4447	0.37	+0.2
5,042,148	-		PP_4447	0.37	+1.3
5,042,217	+		PP_4447	0.43	-1.5
5,042,218	-		PP_4447	0.43	+2.1
5,042,294	+		PP_4447	0.49	-2.6
5,042,295	-		PP_4447	0.49	+0.3
5,042,351	+		PP_4447	0.53	+1.3
5,042,717	+		PP_4447	0.83	+2.5
5,042,720	+		PP_4447	0.83	+0.6
5,042,972	+				+1.4
5,043,001	+				+1.2
5,043,056	-				+2.0
5,043,176	+		PP_4448	0.14	+1.0
5,043,236	+		PP_4448	0.17	-1.5
5,043,278	+		PP_4448	0.20	+0.7
5,043,362	+		PP_4448	0.24	+0.2
5,043,362	+		PP_4448	0.24	+1.9
5,043,564	-		PP_4448	0.36	-0.1
5,043,639	+		PP_4448	0.40	+1.4
5,043,643	+		PP_4448	0.40	+1.2
5,043,804	-		PP_4448	0.49	-2.1
5,043,815	-		PP_4448	0.50	+1.1
5,043,850	+		PP_4448	0.52	-0.0
5,043,875	-		PP_4448	0.54	-1.2