Strain Fitness in Pseudomonas putida KT2440 around PP_4433

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,028,373	-		PP_4432	0.54	-2.4
5,028,373	-				+0.1
5,028,384	+		PP_4432	0.55	+0.7
5,028,425	+		PP_4432	0.58	+1.5
5,028,501	+		PP_4432	0.64	+1.1
5,028,502	-		PP_4432	0.65	-2.1
5,028,502	-		PP_4432	0.65	+0.5
5,028,502	-		PP_4432	0.65	+0.1
5,028,502	-		PP_4432	0.65	-2.3
5,028,502	-		PP_4432	0.65	-0.4
5,028,538	-		PP_4432	0.68	+0.8
5,028,641	+		PP_4432	0.76	+1.6
5,028,724	-		PP_4432	0.83	-2.4
5,028,724	-		PP_4432	0.83	+1.1
5,028,791	+		PP_4432	0.89	+0.8
5,028,791	+		PP_4432	0.89	+2.7
5,028,791	+		PP_4432	0.89	+0.6
5,028,792	-		PP_4432	0.89	+0.9
5,028,817	+				+1.1
5,028,817	+				+0.7
5,028,818	-				+0.0
5,028,818	-				+1.1
5,028,818	-				-1.1
5,028,870	-				+2.1
5,028,949	+				-0.4
5,028,950	-				+1.5
5,029,025	-				+0.8
5,029,095	+				-0.0
5,029,110	-				-2.1
5,029,135	-				+1.6
5,029,135	-				+2.5
5,029,367	+				+0.3
5,029,371	-				-0.6
5,029,459	+				+0.6
5,029,494	+				-1.7
5,029,495	-				-0.4
5,029,500	+		PP_4433	0.10	-1.7
5,029,610	+		PP_4433	0.18	-2.4
5,029,672	+		PP_4433	0.23	+0.6
5,029,673	-		PP_4433	0.23	+0.5
5,029,673	-		PP_4433	0.23	+0.2
5,029,673	-		PP_4433	0.23	+0.5
5,029,673	-		PP_4433	0.23	+1.4
5,029,685	-		PP_4433	0.24	-0.4
5,029,694	+		PP_4433	0.25	+0.4
5,029,712	+		PP_4433	0.26	+0.8
5,029,712	+		PP_4433	0.26	+0.5
5,029,712	+		PP_4433	0.26	-0.3
5,029,713	-		PP_4433	0.26	+1.1
5,029,713	-		PP_4433	0.26	-0.4
5,029,717	-		PP_4433	0.26	+1.6
5,029,736	-		PP_4433	0.28	+1.1
5,029,745	-		PP_4433	0.28	+1.1
5,029,745	-		PP_4433	0.28	+0.6
5,029,751	+		PP_4433	0.29	+2.1
5,029,794	+		PP_4433	0.32	+1.4
5,029,795	-		PP_4433	0.32	+0.9
5,029,809	-		PP_4433	0.33	-1.0
5,029,825	-		PP_4433	0.34	+0.2
5,029,852	-		PP_4433	0.36	+2.6
5,029,947	+		PP_4433	0.43	-1.3
5,029,947	+		PP_4433	0.43	+0.2
5,029,947	+		PP_4433	0.43	+1.1
5,029,947	+		PP_4433	0.43	+0.3
5,029,948	-		PP_4433	0.43	+0.7
5,029,948	-		PP_4433	0.43	+0.9
5,029,948	-		PP_4433	0.43	+1.6
5,030,007	+		PP_4433	0.48	+0.2
5,030,093	+		PP_4433	0.54	+0.2
5,030,538	-		PP_4433	0.87	-1.3
5,030,614	-				-0.2
5,030,614	-				-0.1
5,030,642	+				-0.0
5,030,670	-				+1.2
5,030,712	+				+1.5
5,030,718	-				+0.2
5,030,731	+				-1.0
5,030,732	-				-1.0
5,030,747	+				-0.4
5,030,747	+				-0.6
5,030,748	-				+0.0
5,030,810	-				+0.8
5,030,812	-				+0.7
5,030,812	-				+0.4
5,030,839	+				+0.3
5,030,840	-				+1.6
5,030,846	-				+0.4
5,030,971	-				-0.7
5,031,014	+				-0.2
5,031,147	+				+1.4
5,031,148	-				+1.6
5,031,217	-				+0.1
5,031,222	+				-0.6
5,031,257	+				+1.5
5,031,257	+				+1.4
5,031,258	-				-2.4
5,031,261	-				+0.2
5,031,295	-				-0.2
5,031,295	-				-0.5
5,031,360	-		PP_4434	0.12	+1.6
5,031,360	-		PP_4434	0.12	+1.4
5,031,404	-		PP_4434	0.15	+1.3
5,031,404	-		PP_4434	0.15	+1.8
5,031,433	-		PP_4434	0.17	+0.8
5,031,433	-		PP_4434	0.17	+0.2
5,031,465	-		PP_4434	0.20	-0.5
5,031,510	-		PP_4434	0.23	+0.5
5,031,510	-		PP_4434	0.23	+0.3
5,031,590	-		PP_4434	0.29	+0.8
5,031,592	-		PP_4434	0.29	+1.9
5,031,620	-		PP_4434	0.32	+1.4
5,031,670	-		PP_4434	0.35	+0.6