Strain Fitness in Pseudomonas putida KT2440 around PP_4428

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,022,292	-				-2.8
5,022,326	-				+0.6
5,022,333	-				+1.8
5,022,333	-				-0.3
5,022,433	-		PP_4427	0.12	+0.5
5,022,439	+		PP_4427	0.13	-0.6
5,022,454	-		PP_4427	0.15	+0.5
5,022,530	+		PP_4427	0.27	+0.2
5,022,531	-		PP_4427	0.27	+0.6
5,022,681	-		PP_4427	0.50	+0.4
5,022,709	-		PP_4427	0.54	+1.7
5,022,709	-		PP_4427	0.54	-1.1
5,022,709	-		PP_4427	0.54	+2.6
5,022,722	-		PP_4427	0.56	+0.5
5,022,732	-		PP_4427	0.58	+2.1
5,022,764	-		PP_4427	0.62	+1.0
5,022,860	-		PP_4427	0.77	-1.9
5,022,860	-		PP_4427	0.77	+1.5
5,022,989	+				+0.3
5,022,989	+				-0.2
5,022,989	+				+1.4
5,022,989	+				+0.1
5,022,990	-				-2.4
5,022,990	-				+1.3
5,022,990	-				-2.5
5,022,990	-				+1.9
5,022,999	+				-0.1
5,023,000	-				-1.0
5,023,018	+				+1.1
5,023,028	+				-1.1
5,023,029	-				-0.0
5,023,082	+				+0.7
5,023,113	+				+1.6
5,023,292	-		PP_4428	0.25	+0.9
5,023,342	+		PP_4428	0.31	+1.5
5,023,343	-		PP_4428	0.31	-0.6
5,023,392	+		PP_4428	0.36	-1.3
5,023,442	+		PP_4428	0.42	+1.0
5,023,565	+		PP_4428	0.57	+0.6
5,023,613	+		PP_4428	0.62	+1.3
5,023,613	+		PP_4428	0.62	+1.0
5,023,613	+		PP_4428	0.62	+0.6
5,023,613	+		PP_4428	0.62	+0.8
5,023,613	+		PP_4428	0.62	+0.8
5,023,613	+		PP_4428	0.62	+2.7
5,023,613	+		PP_4428	0.62	+1.0
5,023,613	+		PP_4428	0.62	+1.6
5,023,613	+		PP_4428	0.62	+2.1
5,023,613	+		PP_4428	0.62	+1.6
5,023,614	-		PP_4428	0.62	-0.2
5,023,614	-		PP_4428	0.62	-1.8
5,023,614	-		PP_4428	0.62	-0.2
5,023,614	-		PP_4428	0.62	-0.1
5,023,614	-		PP_4428	0.62	+0.1
5,023,614	-		PP_4428	0.62	+0.5
5,023,684	+		PP_4428	0.71	-3.0
5,023,684	+		PP_4428	0.71	+0.3
5,023,685	-		PP_4428	0.71	+1.4
5,023,685	-		PP_4428	0.71	+2.1
5,023,685	-		PP_4428	0.71	-0.1
5,023,775	+		PP_4428	0.81	-1.2
5,023,775	+		PP_4428	0.81	+1.6
5,023,845	+		PP_4428	0.89	+0.9
5,023,845	+		PP_4428	0.89	+0.4
5,023,845	+		PP_4428	0.89	+1.1
5,023,845	+		PP_4428	0.89	+0.9
5,023,845	+		PP_4428	0.89	+1.5
5,023,845	+		PP_4428	0.89	-0.0
5,023,846	-		PP_4428	0.89	-0.9
5,023,846	-		PP_4428	0.89	-2.3
5,023,846	-		PP_4428	0.89	+0.9
5,023,950	+				+2.0
5,023,950	+				+0.2
5,023,956	-				-1.7
5,023,956	-				+0.1
5,023,989	+				+0.0
5,023,989	+				-0.9
5,023,990	-				+1.1
5,023,990	-				-0.5
5,024,034	+				-0.6
5,024,034	+				-0.2
5,024,080	+				+0.4
5,024,080	+				-0.2
5,024,081	-				-0.6
5,024,081	-				+0.0
5,024,111	+				+0.6
5,024,112	-				+1.7
5,024,136	+				+1.4
5,024,136	+				+1.3
5,024,136	+				+0.2
5,024,137	-				+1.7
5,024,137	-				-1.2
5,024,150	+				+0.9
5,024,150	+				+1.7
5,024,150	+				-1.2
5,024,151	-				+0.9
5,024,162	+				+0.6
5,024,163	-				+1.5
5,024,174	+				+0.9
5,024,174	+				+0.4
5,024,174	+				+1.6
5,024,174	+				-0.4
5,024,174	+				-0.2
5,024,175	-				+0.5
5,024,233	+				+0.9
5,024,234	-				+1.2
5,024,277	+				-0.6
5,024,277	+				+0.6
5,024,277	+				+1.0
5,024,277	+				+0.2
5,024,277	+				+1.1
5,024,277	+				+0.4
5,024,277	+				+0.6
5,024,278	-				+0.4
5,024,278	-				+0.3
5,024,362	+		PP_4429	0.13	+1.5
5,024,363	-		PP_4429	0.13	+0.5
5,024,387	+		PP_4429	0.15	-0.9
5,024,387	+		PP_4429	0.15	+0.4
5,024,388	-		PP_4429	0.15	-0.1
5,024,388	-		PP_4429	0.15	+0.1
5,024,388	-		PP_4429	0.15	+1.2
5,024,390	+		PP_4429	0.15	+1.8
5,024,390	+		PP_4429	0.15	+0.4
5,024,391	-		PP_4429	0.15	+1.0
5,024,391	-				+0.1
5,024,391	-		PP_4429	0.15	+2.1
5,024,444	+		PP_4429	0.19	+0.9
5,024,444	+		PP_4429	0.19	-2.4
5,024,444	+		PP_4429	0.19	-1.9
5,024,444	+		PP_4429	0.19	+0.4
5,024,445	-		PP_4429	0.19	+0.9
5,024,445	-		PP_4429	0.19	+0.7
5,024,452	+		PP_4429	0.19	-1.9
5,024,452	+		PP_4429	0.19	-0.6
5,024,452	+		PP_4429	0.19	+0.8
5,024,452	+		PP_4429	0.19	+0.7
5,024,452	+		PP_4429	0.19	+1.0
5,024,453	-		PP_4429	0.20	+0.4
5,024,453	-		PP_4429	0.20	+1.4
5,024,453	-		PP_4429	0.20	+0.8
5,024,490	-		PP_4429	0.22	+0.6
5,024,490	-		PP_4429	0.22	+2.4
5,024,530	+		PP_4429	0.25	+0.6
5,024,530	+		PP_4429	0.25	+0.1
5,024,531	-		PP_4429	0.25	-1.9
5,024,531	-		PP_4429	0.25	+0.5
5,024,531	-		PP_4429	0.25	+0.9
5,024,559	+		PP_4429	0.27	-0.5
5,024,559	+		PP_4429	0.27	+0.1
5,024,560	-		PP_4429	0.27	+1.1
5,024,560	-		PP_4429	0.27	+1.1
5,024,601	-				+1.1
5,024,712	-		PP_4429	0.38	+1.2
5,024,825	+		PP_4429	0.46	-2.5
5,024,900	+		PP_4429	0.51	+1.8
5,024,900	+		PP_4429	0.51	+0.9
5,024,901	-		PP_4429	0.52	+0.3
5,024,916	+		PP_4429	0.53	-0.8
5,024,916	+		PP_4429	0.53	+0.1
5,024,916	+		PP_4429	0.53	-0.3
5,024,917	-		PP_4429	0.53	-2.2