Strain Fitness in Pseudomonas putida KT2440 around PP_4415

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
5,009,499	+		PP_4412	0.75	+0.6
5,009,507	-		PP_4412	0.77	+1.5
5,009,638	+				+1.3
5,009,638	+				-2.1
5,009,638	+				-0.4
5,009,638	+				-0.2
5,009,639	-				+0.5
5,009,639	-				+1.4
5,009,639	-				+0.7
5,009,639	-				-1.5
5,009,835	+				+1.0
5,009,909	+		PP_4413	0.30	+0.2
5,009,921	+		PP_4413	0.34	+1.5
5,009,921	+		PP_4413	0.34	+3.3
5,009,982	+		PP_4413	0.53	-1.7
5,009,991	+		PP_4413	0.56	-2.6
5,009,991	+		PP_4413	0.56	-0.9
5,009,991	+		PP_4413	0.56	-0.9
5,009,991	+		PP_4413	0.56	-3.1
5,009,991	+		PP_4413	0.56	-0.1
5,009,992	-		PP_4413	0.56	-0.5
5,009,992	-		PP_4413	0.56	+1.5
5,009,992	-		PP_4413	0.56	-0.1
5,009,995	+		PP_4413	0.57	+1.2
5,009,996	-		PP_4413	0.57	+0.7
5,009,996	-		PP_4413	0.57	+1.4
5,010,002	+		PP_4413	0.59	+0.8
5,010,002	+		PP_4413	0.59	+0.1
5,010,104	+				+1.2
5,010,105	-				+0.1
5,010,157	+				+0.5
5,010,158	-				-0.7
5,010,158	-				-0.3
5,010,158	-				+0.7
5,010,214	+				+0.7
5,010,214	+				-1.7
5,010,214	+				+0.7
5,010,214	+				-0.9
5,010,215	-				-0.9
5,010,215	-				-0.5
5,010,279	+				-3.0
5,010,279	+				+0.6
5,010,279	+				+0.4
5,010,280	-				+1.6
5,010,280	-				+1.8
5,010,361	+				+3.3
5,010,362	-				+0.7
5,010,386	+				-0.7
5,010,386	+				+1.3
5,010,386	+				+3.3
5,010,386	+				+0.1
5,010,387	-				+1.7
5,010,387	-				+4.4
5,010,387	-				-0.6
5,010,399	+				+1.8
5,010,399	+				+1.6
5,010,400	-				+0.6
5,010,405	+				+0.7
5,010,406	-				+1.0
5,010,485	-				-3.1
5,010,485	-				+1.3
5,010,485	-				+1.4
5,010,485	-				+1.7
5,010,555	-				+0.8
5,010,555	-				+0.9
5,010,638	+		PP_4415	0.13	+0.4
5,010,639	-		PP_4415	0.13	-1.0
5,010,672	-		PP_4415	0.16	+1.0
5,010,672	-		PP_4415	0.16	+1.4
5,010,675	+		PP_4415	0.17	-0.5
5,010,676	-		PP_4415	0.17	+1.1
5,010,676	-		PP_4415	0.17	-1.0
5,010,676	-		PP_4415	0.17	+1.9
5,010,684	+		PP_4415	0.18	+1.6
5,010,684	+		PP_4415	0.18	+1.0
5,010,684	+		PP_4415	0.18	+1.0
5,010,743	+		PP_4415	0.23	-0.2
5,010,743	+		PP_4415	0.23	+0.9
5,010,743	+		PP_4415	0.23	-2.1
5,010,743	+		PP_4415	0.23	+1.4
5,010,744	-		PP_4415	0.23	+1.7
5,010,744	-		PP_4415	0.23	+2.0
5,010,744	-		PP_4415	0.23	-3.0
5,010,744	-		PP_4415	0.23	-0.0
5,010,744	-		PP_4415	0.23	+0.6
5,010,744	-		PP_4415	0.23	-2.6
5,010,744	-		PP_4415	0.23	+0.4
5,010,744	-		PP_4415	0.23	+0.1
5,010,869	+		PP_4415	0.34	+0.6
5,010,870	-		PP_4415	0.34	-1.1
5,010,889	+		PP_4415	0.36	-2.9
5,010,949	+		PP_4415	0.42	+0.7
5,010,950	-		PP_4415	0.42	+0.2
5,010,980	+		PP_4415	0.44	-2.4
5,010,980	+		PP_4415	0.44	-0.1
5,010,981	-		PP_4415	0.45	+1.8
5,010,981	-		PP_4415	0.45	-0.5
5,011,025	-		PP_4415	0.49	+1.0
5,011,054	+		PP_4415	0.51	-0.3
5,011,104	+		PP_4415	0.56	-0.7
5,011,105	-		PP_4415	0.56	+1.1
5,011,108	+		PP_4415	0.56	-0.1
5,011,196	+		PP_4415	0.64	-0.2
5,011,197	-				+1.1
5,011,197	-		PP_4415	0.64	-1.4
5,011,459	+		PP_4415	0.88	+0.7
5,011,459	+		PP_4415	0.88	-0.3
5,011,460	-		PP_4415	0.88	+0.7
5,011,524	-				-1.8
5,011,524	-				+0.5
5,011,719	-		PP_5675	0.12	+1.1
5,011,773	+		PP_5675	0.36	+2.6
5,011,774	-		PP_5675	0.36	-2.5
5,011,832	+		PP_5675	0.62	+1.6
5,011,833	-		PP_5675	0.62	+1.2
5,011,849	+		PP_5675	0.69	+0.7
5,011,850	-		PP_5675	0.70	-1.5
5,011,897	-				+1.2
5,011,903	+				+0.3
5,011,903	+				+0.1
5,011,904	-				+0.4
5,011,904	-				+0.8
5,011,904	-				+0.6
5,011,915	+				-0.0
5,011,915	+				+0.3
5,011,916	-				+1.7
5,011,943	-				+1.0
5,011,950	+				+0.7
5,011,950	+				-2.3
5,011,952	+				+1.3
5,011,952	+				+0.8
5,011,952	+				+0.4
5,011,952	+				-0.8
5,011,953	-				+2.6
5,011,953	-				+1.6
5,011,953	-				+0.4
5,011,953	-				+0.5
5,011,953	-				+0.6
5,011,953	-				+0.5
5,011,953	-				-1.0
5,011,953	-				-2.1
5,012,008	+				-0.7
5,012,129	-		PP_5676	0.30	+0.0
5,012,129	-				+0.1
5,012,167	-		PP_5676	0.40	+1.1
5,012,168	+		PP_5676	0.40	+0.9
5,012,168	+		PP_5676	0.40	+0.1
5,012,169	-		PP_5676	0.40	+0.3
5,012,169	-		PP_5676	0.40	+1.5
5,012,169	-		PP_5676	0.40	+0.4
5,012,169	-		PP_5676	0.40	-0.7
5,012,169	-		PP_5676	0.40	+1.4
5,012,182	-		PP_5676	0.44	-0.5
5,012,218	-		PP_5676	0.52	-2.4
5,012,304	+		PP_5676	0.74	-2.3
5,012,313	+		PP_5676	0.76	-1.4
5,012,313	+		PP_5676	0.76	+0.6
5,012,313	+		PP_5676	0.76	+2.5
5,012,313	+		PP_5676	0.76	+1.0
5,012,313	+		PP_5676	0.76	+0.7
5,012,313	+		PP_5676	0.76	+1.5
5,012,313	+		PP_5676	0.76	+1.8
5,012,313	+		PP_5676	0.76	+0.6
5,012,313	+		PP_5676	0.76	+0.3
5,012,313	+		PP_5676	0.76	+0.1
5,012,355	+		PP_5676	0.87	+0.8
5,012,355	+		PP_5676	0.87	+1.6
5,012,355	+		PP_5676	0.87	+2.8