Strain Fitness in Pseudomonas putida KT2440 around PP_4319

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,909,740	+				-0.1
4,909,744	+				+0.9
4,909,744	+				-2.9
4,909,745	-				-0.2
4,909,768	-				+1.2
4,909,768	-				-3.4
4,909,768	-				-1.4
4,910,030	+				+0.9
4,910,073	+				+0.9
4,910,074	-				-1.8
4,910,074	-				-2.5
4,910,087	+				-2.7
4,910,087	+				-1.5
4,910,088	-				-0.4
4,910,088	-				+0.6
4,910,193	-		PP_4319	0.26	+3.3
4,910,193	-		PP_4319	0.26	+0.6
4,910,195	+		PP_4319	0.26	-0.8
4,910,195	+		PP_4319	0.26	-2.8
4,910,195	+		PP_4319	0.26	-0.1
4,910,196	-		PP_4319	0.26	-0.3
4,910,196	-		PP_4319	0.26	-2.2
4,910,196	-		PP_4319	0.26	-0.9
4,910,199	+		PP_4319	0.27	-2.5
4,910,199	+		PP_4319	0.27	-2.6
4,910,200	-		PP_4319	0.27	+0.7
4,910,200	-		PP_4319	0.27	+1.2
4,910,217	+		PP_4319	0.31	-1.1
4,910,218	-		PP_4319	0.32	-2.9
4,910,236	+		PP_4319	0.36	-2.9
4,910,236	+		PP_4319	0.36	-3.2
4,910,236	+		PP_4319	0.36	-1.1
4,910,236	+		PP_4319	0.36	+0.1
4,910,237	-		PP_4319	0.36	-0.3
4,910,237	-		PP_4319	0.36	-2.8
4,910,237	-		PP_4319	0.36	-2.4
4,910,237	-		PP_4319	0.36	+0.5
4,910,237	-		PP_4319	0.36	+0.0
4,910,240	+		PP_4319	0.37	+1.6
4,910,240	+		PP_4319	0.37	-1.3
4,910,240	+		PP_4319	0.37	-2.9
4,910,240	+		PP_4319	0.37	-0.5
4,910,240	+		PP_4319	0.37	+1.2
4,910,240	+		PP_4319	0.37	-0.8
4,910,240	+		PP_4319	0.37	-1.9
4,910,240	+				+1.2
4,910,240	+		PP_4319	0.37	-1.9
4,910,240	+		PP_4319	0.37	+0.8
4,910,240	+		PP_4319	0.37	-0.4
4,910,240	+		PP_4319	0.37	-0.3
4,910,240	+		PP_4319	0.37	-1.2
4,910,240	+		PP_4319	0.37	+0.3
4,910,241	-		PP_4319	0.37	+1.0
4,910,241	-		PP_4319	0.37	-2.2
4,910,241	-		PP_4319	0.37	-0.4
4,910,241	-		PP_4319	0.37	+0.7
4,910,241	-		PP_4319	0.37	-0.4
4,910,241	-		PP_4319	0.37	-0.8
4,910,241	-		PP_4319	0.37	-0.8
4,910,241	-		PP_4319	0.37	+1.1
4,910,241	-		PP_4319	0.37	+1.6
4,910,241	-		PP_4319	0.37	+0.0
4,910,241	-		PP_4319	0.37	-0.4
4,910,241	-		PP_4319	0.37	-1.3
4,910,241	-		PP_4319	0.37	-1.5
4,910,241	-		PP_4319	0.37	+0.8
4,910,241	-		PP_4319	0.37	-1.4
4,910,241	-		PP_4319	0.37	-2.5
4,910,242	+		PP_4319	0.37	-1.1
4,910,242	+		PP_4319	0.37	-2.4
4,910,242	+		PP_4319	0.37	-2.7
4,910,242	+		PP_4319	0.37	+1.2
4,910,242	+		PP_4319	0.37	-0.2
4,910,242	+		PP_4319	0.37	-2.1
4,910,242	+		PP_4319	0.37	-1.2
4,910,243	-		PP_4319	0.38	-2.1
4,910,243	-		PP_4319	0.38	-0.2
4,910,243	-		PP_4319	0.38	+1.0
4,910,243	-		PP_4319	0.38	-3.1
4,910,243	-		PP_4319	0.38	+1.5
4,910,304	+		PP_4319	0.52	-1.8
4,910,304	+		PP_4319	0.52	-0.9
4,910,305	-		PP_4319	0.53	-2.4
4,910,430	-		PP_4319	0.82	-1.1
4,910,445	+		PP_4319	0.86	+2.2
4,910,445	+		PP_4319	0.86	-1.6
4,910,446	-		PP_4319	0.86	+1.0
4,910,446	-		PP_4319	0.86	+0.6
4,910,781	+		PP_4320	0.22	-1.8
4,910,782	-		PP_4320	0.22	-0.2
4,910,919	+		PP_4320	0.34	-1.0
4,910,984	+		PP_4320	0.39	-0.1
4,911,003	-		PP_4320	0.41	-1.1
4,911,198	+		PP_4320	0.57	+0.8
4,911,233	+		PP_4320	0.60	-2.6
4,911,234	-		PP_4320	0.60	+0.4
4,911,251	+		PP_4320	0.61	-2.4
4,911,251	+		PP_4320	0.61	+0.5
4,911,252	-		PP_4320	0.62	-0.0
4,911,252	-		PP_4320	0.62	+0.8
4,911,303	+		PP_4320	0.66	+0.4
4,911,384	-				+1.2