Strain Fitness in Pseudomonas putida KT2440 around PP_4271

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,856,209	-				-0.2
4,856,236	-				+2.0
4,856,308	+		PP_5670	0.30	-0.1
4,856,308	+		PP_5670	0.30	-4.1
4,856,309	-		PP_5670	0.31	-0.5
4,856,309	-		PP_5670	0.31	-2.4
4,856,334	+		PP_5670	0.40	-0.6
4,856,334	+		PP_5670	0.40	+0.8
4,856,364	-		PP_5670	0.51	-1.1
4,856,364	-		PP_5670	0.51	+0.4
4,856,378	+		PP_5670	0.56	-0.1
4,856,521	+				+0.4
4,856,521	+				-0.9
4,856,544	+				-0.4
4,856,544	+				-0.6
4,856,544	+				-1.4
4,856,545	-				-2.9
4,856,558	+				-0.4
4,856,559	-				-3.5
4,856,628	-				-0.9
4,856,695	+				-0.2
4,856,696	-				+1.4
4,856,744	+				+1.4
4,856,749	+				+0.2
4,856,750	-				-3.1
4,856,757	+				-0.9
4,856,759	+				+1.4
4,856,760	-				+1.1
4,856,760	-				-0.5
4,856,763	+				-3.2
4,856,763	+				-0.9
4,856,764	-				+0.0
4,856,764	-				+0.1
4,856,764	-				-2.6
4,856,774	+				+0.4
4,856,774	+				-0.4
4,856,775	-				+0.4
4,856,794	+				+1.1
4,856,795	-				+0.3
4,856,808	-				+0.4
4,856,828	+				+0.3
4,856,828	+				+0.6
4,856,828	+				-0.8
4,856,829	-				-3.1
4,856,829	-				-0.8
4,856,829	-				-3.3
4,856,829	-				+0.1
4,856,829	-				+0.4
4,856,856	+				+0.4
4,856,857	-				+0.3
4,856,857	-				-0.7
4,856,857	-				-2.9
4,856,857	-				+0.9
4,856,945	+				-3.0
4,857,054	+		PP_5671	0.50	-0.6
4,857,055	-		PP_5671	0.51	-0.7
4,857,116	+		PP_5671	0.82	-0.2
4,857,116	+		PP_5671	0.82	-2.4
4,857,116	+		PP_5671	0.82	+0.7
4,857,116	+		PP_5671	0.82	-1.4
4,857,117	-		PP_5671	0.83	-3.1
4,857,117	-				+3.4
4,857,117	-		PP_5671	0.83	-1.8
4,857,117	-		PP_5671	0.83	-0.6
4,857,117	-		PP_5671	0.83	-2.6
4,857,117	-		PP_5671	0.83	+2.0
4,857,117	-		PP_5671	0.83	-0.6
4,857,159	+				-1.4
4,857,160	-				+0.8
4,857,177	+				+0.5
4,857,177	+				+0.2
4,857,178	-				+0.3
4,857,323	-		PP_4271	0.78	-1.1
4,857,384	+				+1.0
4,857,385	-				-2.2
4,857,385	-				+0.3
4,857,393	+				+0.5
4,857,393	+				-2.2
4,857,459	-		PP_4272	0.15	-2.7
4,857,555	+		PP_4272	0.32	-2.1
4,857,555	+		PP_4272	0.32	-0.3
4,857,555	+		PP_4272	0.32	+0.9
4,857,555	+		PP_4272	0.32	-2.7
4,857,556	-		PP_4272	0.32	-2.4
4,857,556	-		PP_4272	0.32	-2.5
4,857,556	-		PP_4272	0.32	+0.8
4,857,556	-		PP_4272	0.32	-1.2
4,857,556	-		PP_4272	0.32	+0.1
4,857,565	-		PP_4272	0.34	-1.9
4,857,565	-		PP_4272	0.34	-3.5
4,857,572	+		PP_4272	0.35	+1.1
4,857,573	-		PP_4272	0.35	-3.1
4,857,721	-		PP_4272	0.61	-2.7
4,857,770	+		PP_4272	0.70	-0.6
4,857,774	+		PP_4272	0.71	+0.9
4,857,775	-		PP_4272	0.71	-0.2
4,857,775	-		PP_4272	0.71	+1.5
4,857,810	+		PP_4272	0.77	-3.6
4,857,810	+		PP_4272	0.77	+0.1
4,857,810	+		PP_4272	0.77	-1.3
4,857,811	-		PP_4272	0.78	-0.9
4,857,811	-		PP_4272	0.78	-2.5
4,857,811	-		PP_4272	0.78	+1.5
4,857,844	-		PP_4272	0.84	+0.5
4,857,858	-		PP_4272	0.86	+2.3
4,857,897	+				-1.6
4,857,897	+				-0.3
4,857,898	-				+1.1
4,857,898	-				-0.8
4,857,914	+				+0.7
4,857,915	-				-1.0
4,857,984	+				-0.4
4,857,985	-				-0.9
4,857,985	-				+1.0
4,858,005	-		PP_4273	0.13	-1.1
4,858,007	+		PP_4273	0.14	+3.0