Strain Fitness in Pseudomonas putida KT2440 around PP_4228

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,799,517	+		PP_5664	0.19	+1.2
4,799,557	+		PP_5664	0.25	-1.1
4,799,636	+		PP_5664	0.38	-3.2
4,799,636	+		PP_5664	0.38	-0.2
4,799,641	-		PP_5664	0.39	-2.2
4,799,677	-		PP_5664	0.45	+0.4
4,799,797	+		PP_5664	0.64	-0.0
4,799,884	-		PP_5664	0.78	-0.2
4,799,962	+				-1.7
4,799,963	-				-2.2
4,799,963	-				-1.6
4,799,968	+				-3.6
4,799,968	+				-0.9
4,800,024	+		PP_4227	0.12	+0.6
4,800,025	-		PP_4227	0.12	+0.4
4,800,392	+				-0.3
4,800,468	+				+0.7
4,800,506	+				+1.0
4,800,528	+				-2.4
4,800,530	+				+1.7
4,800,530	+				+2.7
4,800,531	-				-2.3
4,800,580	+		PP_4228	0.14	-0.3
4,800,605	+		PP_4228	0.18	-1.5
4,800,654	-		PP_4228	0.26	-1.0
4,800,680	-		PP_4228	0.30	-0.5
4,800,829	+		PP_4228	0.54	-2.9
4,800,979	+		PP_4228	0.78	-1.6
4,800,979	+		PP_4228	0.78	-1.0
4,800,979	+		PP_4228	0.78	+1.0
4,801,130	-				-2.4
4,801,220	+		PP_4229	0.13	-2.2
4,801,253	+		PP_4229	0.19	-2.8
4,801,253	+		PP_4229	0.19	+0.7
4,801,253	+		PP_4229	0.19	-1.5
4,801,254	-		PP_4229	0.19	-0.2
4,801,319	+		PP_4229	0.29	+0.6
4,801,330	-		PP_4229	0.31	+0.1
4,801,330	-				-0.6
4,801,351	+		PP_4229	0.34	-3.3
4,801,352	-		PP_4229	0.34	-1.4
4,801,376	+		PP_4229	0.38	+0.1
4,801,376	+		PP_4229	0.38	-2.5
4,801,376	+		PP_4229	0.38	+0.1
4,801,376	+		PP_4229	0.38	-1.2
4,801,377	-		PP_4229	0.38	+0.8
4,801,377	-		PP_4229	0.38	+2.0
4,801,412	+				+1.4
4,801,412	+		PP_4229	0.44	+1.5
4,801,412	+		PP_4229	0.44	-1.2
4,801,412	+		PP_4229	0.44	-0.0
4,801,413	-		PP_4229	0.44	+0.6
4,801,413	-		PP_4229	0.44	-2.2
4,801,416	+		PP_4229	0.45	+1.3
4,801,416	+		PP_4229	0.45	+0.5
4,801,417	-		PP_4229	0.45	-0.0
4,801,619	+		PP_4229	0.77	-0.5
4,801,733	+				-1.6
4,801,733	+				+0.6
4,801,734	-				-2.9
4,801,734	-				-3.4
4,801,734	-				-2.0
4,801,760	+				-1.2
4,801,761	-				-1.8
4,801,977	+		PP_4230	0.35	-2.7
4,801,977	+		PP_4230	0.35	-0.7
4,801,977	+		PP_4230	0.35	+0.4
4,801,977	+		PP_4230	0.35	+0.7
4,801,978	-		PP_4230	0.35	-0.0
4,802,039	+		PP_4230	0.46	-0.9
4,802,039	+		PP_4230	0.46	-0.7
4,802,040	-		PP_4230	0.46	+2.0
4,802,108	+		PP_4230	0.58	-0.0