Strain Fitness in Pseudomonas putida KT2440 around PP_4210

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,753,769	-		PP_4209	0.16	-2.7
4,753,911	-		PP_4209	0.28	-0.6
4,754,070	+		PP_4209	0.41	-3.0
4,754,070	+		PP_4209	0.41	+0.3
4,754,071	-		PP_4209	0.42	-2.6
4,754,130	+		PP_4209	0.47	+1.4
4,754,150	+		PP_4209	0.48	-3.1
4,754,151	-		PP_4209	0.48	+0.7
4,754,165	-		PP_4209	0.50	-0.0
4,754,165	-		PP_4209	0.50	+2.7
4,754,165	-		PP_4209	0.50	-0.2
4,754,466	+		PP_4209	0.75	-0.4
4,754,467	-		PP_4209	0.75	+1.3
4,754,467	-		PP_4209	0.75	-0.6
4,754,467	-		PP_4209	0.75	-0.2
4,754,564	+		PP_4209	0.83	+0.4
4,754,564	+		PP_4209	0.83	+0.4
4,754,565	-		PP_4209	0.83	-2.6
4,754,565	-				+0.4
4,754,591	+		PP_4209	0.86	+0.2
4,754,608	+		PP_4209	0.87	-0.4
4,754,608	+		PP_4209	0.87	-2.6
4,754,609	-		PP_4209	0.87	-3.3
4,754,698	+				+1.4
4,754,698	+				+0.1
4,754,698	+				-0.1
4,754,698	+				+1.7
4,754,699	-				+1.4
4,754,699	-				+0.4
4,754,699	-				-1.9
4,754,796	-				-1.6
4,754,796	-				-0.1
4,754,827	+				-1.4
4,754,827	+				-1.6
4,754,827	+				-0.1
4,754,827	+				+0.3
4,754,921	+				-0.4
4,754,921	+				-0.2
4,754,958	+		PP_4210	0.10	-2.6
4,754,959	-		PP_4210	0.10	+1.4
4,754,959	-		PP_4210	0.10	+0.3
4,755,102	+		PP_4210	0.17	-1.3
4,755,102	+		PP_4210	0.17	-0.9
4,755,103	-		PP_4210	0.17	-1.4
4,755,103	-		PP_4210	0.17	-1.1
4,755,103	-		PP_4210	0.17	+1.6
4,755,103	-		PP_4210	0.17	-0.1
4,755,300	-		PP_4210	0.27	-2.9
4,755,352	+		PP_4210	0.30	+1.4
4,755,352	+		PP_4210	0.30	-3.0
4,755,352	+		PP_4210	0.30	-2.4
4,755,352	+		PP_4210	0.30	-2.4
4,755,353	-		PP_4210	0.30	-3.6
4,755,353	-		PP_4210	0.30	+0.3
4,755,353	-		PP_4210	0.30	+1.4
4,755,353	-		PP_4210	0.30	-1.4
4,755,353	-		PP_4210	0.30	-1.9
4,755,478	+		PP_4210	0.37	-3.3
4,755,479	-		PP_4210	0.37	-2.8
4,755,686	-		PP_4210	0.47	+1.1
4,755,721	+		PP_4210	0.49	-2.1
4,755,721	+		PP_4210	0.49	-0.7
4,755,721	+		PP_4210	0.49	-0.1
4,755,721	+		PP_4210	0.49	-1.1
4,755,721	+		PP_4210	0.49	-1.0
4,755,722	-		PP_4210	0.49	-2.9
4,755,722	-		PP_4210	0.49	-3.0
4,755,723	+		PP_4210	0.49	-2.1
4,755,724	-		PP_4210	0.49	-2.0
4,755,724	-		PP_4210	0.49	+0.2
4,755,724	-		PP_4210	0.49	+0.1
4,755,880	-		PP_4210	0.57	+1.5
4,756,044	+		PP_4210	0.65	-1.9
4,756,045	-		PP_4210	0.65	-2.3
4,756,048	+		PP_4210	0.66	-3.2
4,756,048	+		PP_4210	0.66	-1.5
4,756,048	+		PP_4210	0.66	-1.6
4,756,049	-		PP_4210	0.66	+1.4
4,756,049	-		PP_4210	0.66	-0.8
4,756,049	-		PP_4210	0.66	-0.6
4,756,049	-		PP_4210	0.66	-3.3
4,756,063	+		PP_4210	0.66	-0.5
4,756,063	+		PP_4210	0.66	-1.7
4,756,063	+		PP_4210	0.66	-1.0
4,756,064	-		PP_4210	0.66	-0.1
4,756,193	+		PP_4210	0.73	-0.7
4,756,194	-		PP_4210	0.73	-0.9
4,756,408	-		PP_4210	0.84	-2.1
4,756,577	+				-3.5
4,756,578	-				-0.6
4,756,712	+				+0.8
4,756,712	+				+0.3
4,756,805	+				-2.9
4,756,805	+				-0.3
4,756,805	+				-1.3
4,756,813	+				-1.7
4,756,994	-		PP_4211	0.19	-0.1
4,756,994	-		PP_4211	0.19	-0.6
4,757,265	+		PP_4211	0.38	+0.2
4,757,266	-		PP_4211	0.38	-2.3
4,757,300	+		PP_4211	0.40	+0.9
4,757,303	-		PP_4211	0.41	-0.0