Strain Fitness in Pseudomonas putida KT2440 around PP_4102

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,635,860	+		PP_4100	0.11	+1.3
4,635,860	+		PP_4100	0.11	+0.4
4,636,030	+		PP_4100	0.54	+0.5
4,636,030	+		PP_4100	0.54	+0.4
4,636,030	+		PP_4100	0.54	+0.7
4,636,030	+		PP_4100	0.54	+1.9
4,636,030	+		PP_4100	0.54	+1.3
4,636,030	+		PP_4100	0.54	-2.0
4,636,031	-		PP_4100	0.54	+0.3
4,636,031	-		PP_4100	0.54	+0.1
4,636,031	-		PP_4100	0.54	+3.8
4,636,031	-		PP_4100	0.54	+0.9
4,636,070	-		PP_4100	0.64	-1.5
4,636,070	-		PP_4100	0.64	-0.0
4,636,074	+		PP_4100	0.65	+1.0
4,636,075	-		PP_4100	0.66	-1.1
4,636,102	+		PP_4100	0.73	-2.3
4,636,103	-		PP_4100	0.73	-0.5
4,636,147	-		PP_4100	0.84	-2.2
4,636,160	+		PP_4100	0.87	-0.2
4,636,209	-				+1.7
4,636,229	+				+0.7
4,636,229	+				+0.9
4,636,241	+				+0.9
4,636,241	+				-0.3
4,636,242	-				-0.3
4,636,268	+				-1.5
4,636,268	+				+0.9
4,636,269	-				+0.6
4,636,269	-				+0.4
4,636,285	+				+0.0
4,636,285	+				-1.5
4,636,286	-				+0.7
4,636,321	+				-1.3
4,636,322	-				+1.1
4,636,322	-				+0.5
4,636,322	-				-1.5
4,636,328	+				-2.7
4,636,328	+				+0.7
4,636,329	-				-3.2
4,636,329	-				-1.4
4,636,329	-				-0.8
4,636,329	-				-0.1
4,636,336	+				+0.2
4,636,336	+				+0.9
4,636,337	-				-1.1
4,636,352	+				+1.4
4,636,353	-				+0.3
4,636,398	+		PP_4101	0.18	-0.1
4,636,601	+		PP_4101	0.64	-0.1
4,636,601	+		PP_4101	0.64	+1.3
4,636,602	-		PP_4101	0.64	-2.2
4,636,602	-		PP_4101	0.64	+1.1
4,636,602	-		PP_4101	0.64	-1.3
4,636,602	-		PP_4101	0.64	+0.9
4,636,602	-		PP_4101	0.64	+1.5
4,636,678	-		PP_4101	0.82	+0.9
4,636,678	-		PP_4101	0.82	+1.9
4,636,702	+		PP_4101	0.87	+1.3
4,636,751	+				-1.3
4,636,751	+				+0.1
4,636,751	+				+1.3
4,636,752	-				+1.4
4,636,752	-				+2.5
4,636,752	-				+1.8
4,636,780	+				+0.6
4,636,781	-				-2.3
4,636,880	-		PP_4102	0.28	+0.4
4,636,880	-		PP_4102	0.28	+0.6
4,636,925	-		PP_4102	0.40	+0.7
4,637,009	+		PP_4102	0.62	-2.3
4,637,101	-		PP_4102	0.86	+1.7
4,637,101	-		PP_4102	0.86	-1.9
4,637,134	+				-0.1
4,637,134	+				+0.4
4,637,134	+				+0.8
4,637,134	+				-2.5
4,637,135	-				-0.7
4,637,173	+				-3.6
4,637,174	-				+1.6
4,637,195	+				-0.8
4,637,196	-				-0.1
4,637,196	-				+1.8
4,637,236	-				+0.6
4,637,237	+				-0.5
4,637,316	+				+0.6
4,637,374	-				+1.0
4,637,374	-				+0.7
4,637,412	-				+1.1
4,637,568	+		PP_4103	0.18	-0.5
4,637,568	+		PP_4103	0.18	+0.6
4,637,568	+		PP_4103	0.18	+0.3
4,637,569	-		PP_4103	0.18	+1.8
4,637,569	-		PP_4103	0.18	+1.9
4,637,570	+		PP_4103	0.18	-1.9
4,637,570	+		PP_4103	0.18	-0.5
4,637,571	-		PP_4103	0.18	+0.5
4,637,571	-		PP_4103	0.18	-1.1
4,637,571	-		PP_4103	0.18	+0.7
4,637,571	-		PP_4103	0.18	-0.4
4,637,571	-		PP_4103	0.18	-0.4
4,637,571	-		PP_4103	0.18	+1.4
4,637,571	-		PP_4103	0.18	+3.0
4,637,685	+		PP_4103	0.25	+0.6
4,637,686	-		PP_4103	0.25	+1.5
4,637,697	+		PP_4103	0.25	-0.8
4,637,697	+		PP_4103	0.25	+1.5
4,637,698	-				+3.8
4,637,698	-		PP_4103	0.26	-1.1
4,637,909	+		PP_4103	0.39	+0.9
4,637,910	-		PP_4103	0.39	+0.5
4,637,999	+		PP_4103	0.44	-0.3
4,638,000	-		PP_4103	0.44	+2.7
4,638,048	+		PP_4103	0.47	-0.3
4,638,048	+		PP_4103	0.47	-1.5
4,638,155	+		PP_4103	0.54	+0.3