Strain Fitness in Pseudomonas putida KT2440 around PP_4072

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,598,814	+		PP_4071	0.73	-2.0
4,598,907	+		PP_4071	0.75	-2.4
4,598,955	+		PP_4071	0.76	-0.5
4,598,956	-		PP_4071	0.76	-1.7
4,598,956	-		PP_4071	0.76	-1.7
4,598,956	-		PP_4071	0.76	-0.8
4,599,053	+		PP_4071	0.79	+0.1
4,599,408	+		PP_4071	0.89	+0.4
4,599,409	-		PP_4071	0.89	+1.0
4,599,409	-		PP_4071	0.89	+0.2
4,599,424	-		PP_4071	0.89	+0.5
4,599,456	+				-3.0
4,599,457	-				-0.5
4,599,629	-				-0.8
4,599,629	-				+1.1
4,599,631	+				-2.3
4,599,631	+				+1.8
4,599,631	+				+0.6
4,599,631	+				-0.0
4,599,631	+				-0.1
4,599,631	+				-0.9
4,599,631	+				-0.1
4,599,631	+				+1.1
4,599,631	+				-0.6
4,599,631	+				-2.4
4,599,632	-				+1.0
4,599,731	+				+0.0
4,599,731	+				+0.2
4,599,731	+				-1.8
4,599,732	-				-1.6
4,599,790	-				+0.1
4,599,858	-				-1.6
4,599,858	-				+0.9
4,599,877	+				-2.7
4,600,000	-		PP_4072	0.13	+1.5
4,600,000	-		PP_4072	0.13	-1.1
4,600,051	+		PP_4072	0.17	+0.3
4,600,051	+		PP_4072	0.17	+0.6
4,600,066	+		PP_4072	0.18	-2.9
4,600,067	-		PP_4072	0.18	-0.1
4,600,390	+		PP_4072	0.40	+0.1
4,600,391	-		PP_4072	0.40	-0.5
4,600,391	-		PP_4072	0.40	-0.6
4,600,391	-		PP_4072	0.40	-1.5
4,600,416	-		PP_4072	0.42	-0.2
4,600,455	+		PP_4072	0.44	+0.4
4,600,455	+		PP_4072	0.44	-0.3
4,600,456	-		PP_4072	0.44	-2.4
4,600,456	-		PP_4072	0.44	+0.7
4,600,538	+		PP_4072	0.50	-2.8
4,600,702	-		PP_4072	0.61	-1.0
4,600,702	-		PP_4072	0.61	-0.3
4,600,789	+		PP_4072	0.67	+1.2
4,600,790	-		PP_4072	0.67	-0.3
4,600,838	+		PP_4072	0.70	-2.5
4,600,838	+		PP_4072	0.70	+1.1
4,600,838	+		PP_4072	0.70	+1.5
4,600,839	-		PP_4072	0.70	+0.9
4,600,839	-		PP_4072	0.70	-1.4
4,600,955	+		PP_4072	0.78	+0.5
4,600,955	+		PP_4072	0.78	+0.1
4,600,955	+		PP_4072	0.78	-2.8
4,600,956	-		PP_4072	0.78	-3.3
4,600,956	-		PP_4072	0.78	+0.1
4,600,956	-		PP_4072	0.78	-2.2
4,600,956	-		PP_4072	0.78	-1.3
4,600,956	-		PP_4072	0.78	+0.4
4,601,078	+		PP_4072	0.87	-1.8
4,601,078	+		PP_4072	0.87	-2.7
4,601,102	+		PP_4072	0.88	-0.8
4,601,168	+				+2.0
4,601,169	-				-0.0
4,601,169	-				-0.1
4,601,260	+				-1.6
4,601,260	+				+1.0
4,601,261	-				-3.0
4,601,352	+		PP_4073	0.15	-2.3
4,601,353	-		PP_4073	0.15	-1.3
4,601,353	-		PP_4073	0.15	+0.8
4,601,877	-				-0.2
4,601,877	-				-0.7
4,601,918	+				-0.5
4,601,919	-				-2.2
4,601,967	+				-0.0
4,602,089	-				+1.3
4,602,113	-				+0.7
4,602,130	+				+1.3
4,602,131	-				-0.5
4,602,134	+				-3.4
4,602,134	+				+1.0
4,602,217	+		PP_4074	0.10	-1.3
4,602,217	+		PP_4074	0.10	-0.5
4,602,217	+		PP_4074	0.10	-0.3
4,602,217	+		PP_4074	0.10	-1.4
4,602,218	-		PP_4074	0.10	-0.9
4,602,251	+		PP_4074	0.17	-0.3