Strain Fitness in Pseudomonas putida KT2440 around PP_4057

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,575,723	+		PP_4056	0.15	+2.0
4,575,757	-		PP_4056	0.19	-1.0
4,575,757	-		PP_4056	0.19	-2.6
4,575,905	-		PP_4056	0.38	-1.1
4,575,943	+				+0.5
4,576,110	+		PP_4056	0.64	+1.0
4,576,295	+		PP_4056	0.87	-0.7
4,576,295	+		PP_4056	0.87	-1.5
4,576,296	-		PP_4056	0.87	-0.7
4,576,296	-		PP_4056	0.87	-0.2
4,576,296	-		PP_4056	0.87	-1.3
4,576,297	+		PP_4056	0.87	-0.8
4,576,297	+		PP_4056	0.87	-3.6
4,576,298	-		PP_4056	0.87	-2.8
4,576,298	-		PP_4056	0.87	-0.9
4,576,412	+				-0.5
4,576,413	-				+1.1
4,576,544	-				-2.7
4,576,544	-				-3.4
4,576,544	-				+0.0
4,576,544	-				-2.3
4,576,554	+				-0.5
4,576,586	+				+1.3
4,576,587	-				-2.7
4,576,808	+				-2.4
4,577,228	+		PP_4057	0.48	-0.9
4,577,228	+		PP_4057	0.48	-1.3
4,577,229	-		PP_4057	0.48	-0.2
4,577,271	+		PP_4057	0.52	-3.2
4,577,558	+				+1.5
4,577,558	+		PP_4057	0.78	-1.1
4,577,558	+		PP_4057	0.78	-2.7
4,577,567	-		PP_4057	0.79	-3.1
4,577,721	-				-0.2
4,577,789	+				+0.2
4,577,815	-				-0.3
4,577,827	-				-0.7
4,577,859	-				+0.3
4,577,887	+				-1.0
4,578,024	+				-2.9
4,578,025	-				+0.9
4,578,166	-		PP_4058	0.12	-1.3
4,578,303	+		PP_4058	0.18	-0.1
4,578,315	+		PP_4058	0.19	-1.7
4,578,417	+		PP_4058	0.23	-1.7
4,578,418	-		PP_4058	0.23	+0.7
4,578,418	-		PP_4058	0.23	-0.5
4,578,537	+				+1.5
4,578,537	+		PP_4058	0.29	-1.5
4,578,538	-		PP_4058	0.29	-0.5
4,578,538	-		PP_4058	0.29	-1.3
4,578,538	-		PP_4058	0.29	+1.5
4,578,538	-		PP_4058	0.29	+3.5
4,578,570	+		PP_4058	0.30	+0.8
4,578,570	+		PP_4058	0.30	+0.5
4,578,571	-		PP_4058	0.30	+1.5
4,578,600	+		PP_4058	0.32	+1.5
4,578,600	+		PP_4058	0.32	-0.5
4,578,600	+		PP_4058	0.32	+2.5
4,578,600	+		PP_4058	0.32	-0.1
4,578,601	-		PP_4058	0.32	-0.5
4,578,601	-		PP_4058	0.32	-2.2
4,578,601	-		PP_4058	0.32	+0.8
4,578,639	+		PP_4058	0.33	-1.8