Strain Fitness in Pseudomonas putida KT2440 around PP_4032

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,542,194	+		PP_4031	0.61	+0.3
4,542,195	-		PP_4031	0.61	+0.5
4,542,195	-		PP_4031	0.61	+0.4
4,542,195	-		PP_4031	0.61	+0.1
4,542,278	+		PP_4031	0.66	+0.3
4,542,278	+		PP_4031	0.66	-1.0
4,542,279	-		PP_4031	0.66	-2.4
4,542,469	+		PP_4031	0.79	+0.6
4,542,470	-		PP_4031	0.79	-1.0
4,542,526	+		PP_4031	0.83	-0.3
4,542,526	+		PP_4031	0.83	-1.7
4,542,526	+		PP_4031	0.83	-2.8
4,542,526	+		PP_4031	0.83	-0.7
4,542,526	+		PP_4031	0.83	+0.9
4,542,526	+		PP_4031	0.83	+0.9
4,542,526	+		PP_4031	0.83	+1.0
4,542,526	+		PP_4031	0.83	-2.1
4,542,526	+		PP_4031	0.83	+0.2
4,542,527	-		PP_4031	0.83	+0.5
4,542,527	-		PP_4031	0.83	-0.4
4,542,527	-		PP_4031	0.83	-0.4
4,542,527	-		PP_4031	0.83	+1.0
4,542,703	+				-2.1
4,542,733	+				+0.3
4,542,734	-				+1.1
4,542,734	-				-0.3
4,542,734	-				-0.4
4,542,735	+				+1.6
4,542,736	-				+0.2
4,542,775	+				+1.5
4,542,775	+				+1.8
4,542,776	-				+1.0
4,542,867	+				-1.2
4,542,867	+				+0.1
4,542,903	+				+0.4
4,542,903	+				+0.7
4,543,044	+		PP_4032	0.20	-2.4
4,543,045	-		PP_4032	0.21	-3.0
4,543,045	-		PP_4032	0.21	+1.0
4,543,053	-		PP_4032	0.22	-3.5
4,543,094	+		PP_4032	0.29	-0.5
4,543,094	+		PP_4032	0.29	-1.2
4,543,150	+		PP_4032	0.40	+0.2
4,543,151	-		PP_4032	0.40	+1.0
4,543,151	-		PP_4032	0.40	-1.7
4,543,151	-		PP_4032	0.40	+0.6
4,543,151	-		PP_4032	0.40	-2.6
4,543,297	-		PP_4032	0.67	-2.2
4,543,309	-		PP_4032	0.69	-0.0
4,543,324	-		PP_4032	0.72	-1.0
4,543,440	+				+0.3
4,543,440	+				-3.0
4,543,441	-				+0.6
4,543,441	-				-2.9
4,543,441	-				-0.8
4,543,441	-				+0.8
4,543,441	-				+1.3
4,543,472	+				+1.6
4,543,472	+				+2.5
4,543,473	-				+0.8
4,543,509	+				+1.5
4,543,526	-				-1.8
4,543,662	+		PP_4033	0.10	+0.9
4,543,663	-		PP_4033	0.10	+1.9
4,544,006	-		PP_4033	0.46	-0.8
4,544,006	-		PP_4033	0.46	-1.1
4,544,066	-		PP_4033	0.52	-0.8
4,544,066	-		PP_4033	0.52	+1.3
4,544,115	+		PP_4033	0.57	+0.2
4,544,116	-		PP_4033	0.57	-1.3
4,544,116	-		PP_4033	0.57	-2.3
4,544,116	-		PP_4033	0.57	+0.2
4,544,116	-		PP_4033	0.57	-2.8
4,544,116	-		PP_4033	0.57	-1.7
4,544,146	-		PP_4033	0.60	-0.5
4,544,146	-		PP_4033	0.60	+2.2
4,544,146	-		PP_4033	0.60	-2.5
4,544,239	+		PP_4033	0.70	-0.7
4,544,239	+		PP_4033	0.70	-0.7
4,544,240	-		PP_4033	0.70	-0.3
4,544,359	+		PP_4033	0.83	-0.8
4,544,360	-		PP_4033	0.83	-0.5
4,544,445	+				-1.5
4,544,446	-				-3.2