Strain Fitness in Pseudomonas putida KT2440 around PP_4018

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,529,571	+				+1.3
4,529,572	-				-0.1
4,529,626	-		PP_4018	0.14	-0.8
4,529,739	+		PP_4018	0.40	-1.1
4,529,739	+		PP_4018	0.40	-0.2
4,529,905	+		PP_4018	0.79	+2.0
4,529,906	-		PP_4018	0.79	+2.5
4,529,928	-		PP_4018	0.84	+0.9
4,530,053	+				-2.4
4,530,053	+				+0.5
4,530,054	-				-0.6
4,530,054	-				+0.7
4,530,054	-				-3.1
4,530,054	-				-1.3
4,530,054	-				-2.0
4,530,055	+				-0.3
4,530,055	+				+0.1
4,530,055	+				+0.4
4,530,055	+				-0.5
4,530,055	+				+0.6
4,530,055	+				-3.1
4,530,055	+				+1.1
4,530,055	+				+1.1
4,530,055	+				+1.2
4,530,055	+				-0.2
4,530,055	+				-2.1
4,530,055	+				+1.1
4,530,055	+				+2.3
4,530,056	-				+0.1
4,530,056	-				-0.3
4,530,056	-				-1.8
4,530,056	-				+0.0
4,530,056	-				-2.2
4,530,056	-				-3.2
4,530,056	-				-3.0
4,530,056	-				+0.5
4,530,128	+				+0.6
4,530,128	+				+0.5
4,530,128	+				-2.1
4,530,129	-				-2.6
4,530,129	-				-0.3
4,530,129	-				+1.1
4,530,129	-				-1.4
4,530,129	-				-3.2
4,530,129	-				+0.4
4,530,129	-				-1.6
4,530,315	+				-1.0
4,530,315	+				-0.4
4,530,316	-				-3.5
4,530,327	+				-2.3
4,530,328	-				+0.9
4,530,328	-				+1.1
4,530,385	+		PP_4019	0.11	-0.5
4,530,737	-		PP_4019	0.29	-0.5
4,530,746	+		PP_4019	0.30	-2.1
4,530,746	+		PP_4019	0.30	+0.2
4,530,746	+		PP_4019	0.30	-0.1
4,530,747	-		PP_4019	0.30	-1.0
4,530,820	+		PP_4019	0.34	+1.5